diff --git a/samtools.wdl b/samtools.wdl index 5bb6d09da2a5ce0484ab776475bdb09e0a7fa2d6..59f5b0eadb9575becb1d783c6e2ddec310fbee68 100644 --- a/samtools.wdl +++ b/samtools.wdl @@ -129,6 +129,7 @@ task view { Int? excludeFilter Int? excludeSpecificFilter Int? threads + Int? memory command { set -e -o pipefail @@ -148,4 +149,8 @@ task view { output { File outputFile = outputFileName } + runtime { + cpu: select_first([threads, 1]) + memory: select_first([memory, 1]) + } }