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Commit 09bf175d authored by Cats's avatar Cats
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fix output name stringtie.wdl

parent f8fea5fe
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...@@ -3,7 +3,7 @@ task Stringtie { ...@@ -3,7 +3,7 @@ task Stringtie {
File alignedReads File alignedReads
File? referenceGFF File? referenceGFF
Int? threads Int? threads
String assembledTranscripts String assembledTranscriptsFile
command { command {
set -e -o pipefail set -e -o pipefail
...@@ -12,11 +12,11 @@ task Stringtie { ...@@ -12,11 +12,11 @@ task Stringtie {
${"-p " + threads} \ ${"-p " + threads} \
${"-G " + referenceGFF} \ ${"-G " + referenceGFF} \
${alignedReads} \ ${alignedReads} \
> ${assembledTranscripts} > ${assembledTranscriptsFile}
} }
output { output {
File assembledTranscripts = assembledTranscripts File assembledTranscripts = assembledTranscriptsFile
} }
runtime { runtime {
......
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