From 09bf175d9cb45648f5afc99cbfd50f9886c86fbd Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Fri, 16 Mar 2018 13:50:04 +0100
Subject: [PATCH] fix output name stringtie.wdl
---
stringtie.wdl | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/stringtie.wdl b/stringtie.wdl
index e8c74d7..cba7076 100644
--- a/stringtie.wdl
+++ b/stringtie.wdl
@@ -3,7 +3,7 @@ task Stringtie {
File alignedReads
File? referenceGFF
Int? threads
- String assembledTranscripts
+ String assembledTranscriptsFile
command {
set -e -o pipefail
@@ -12,11 +12,11 @@ task Stringtie {
${"-p " + threads} \
${"-G " + referenceGFF} \
${alignedReads} \
- > ${assembledTranscripts}
+ > ${assembledTranscriptsFile}
}
output {
- File assembledTranscripts = assembledTranscripts
+ File assembledTranscripts = assembledTranscriptsFile
}
runtime {
--
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