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Commit 09bf175d authored by Cats's avatar Cats
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fix output name stringtie.wdl

parent f8fea5fe
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......@@ -3,7 +3,7 @@ task Stringtie {
File alignedReads
File? referenceGFF
Int? threads
String assembledTranscripts
String assembledTranscriptsFile
command {
set -e -o pipefail
......@@ -12,11 +12,11 @@ task Stringtie {
${"-p " + threads} \
${"-G " + referenceGFF} \
${alignedReads} \
> ${assembledTranscripts}
> ${assembledTranscriptsFile}
}
output {
File assembledTranscripts = assembledTranscripts
File assembledTranscripts = assembledTranscriptsFile
}
runtime {
......
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