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The test sets folder is structured as follows: **/usr/local/NGSTestSets/<platform>/<mode>/<type>/<experiment>/<number>/**
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platform:
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* Illumina_GAII
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* Illumina_HiSeq
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* Ion_Torrent
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* Helicos
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* Pacific_Bio
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* Roche_454
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mode:
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* single_end
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* paired_end
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type:
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* strand_specific
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* mixed_strand
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experiment:
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* exome
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* genome
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* target
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* RNAseq
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* SAGE
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* CAGE
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* ChIPseq
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* denovo
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number:
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* 1, 2, 3, ...
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In each of the dataset folders (e.g., **/usr/local/NGSTestSets/Ion_Torrent/single_end/strand_specific/SAGE/1/**, there should be a text file called README with a link to this page where a description of the data should be. See the table below.
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|| name || owner || species || description || publication ||
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|| Illumina_HiSeq/paired_end/mixed_strand/genome/1 || mvangalen || H.sapiens || Normal Full || CGD Project ||
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|| Illumina_HiSeq/paired_end/strand_specific/RNAseq/1 || jfjlaros || H.sapiens || Normal RNASeq || - ||
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|| Illumina_HiSeq/paired_end/strand_specific/RNAseq/2 || jfjlaros || H.sapiens || Normal RNASeq || - ||
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|| Illumina_HiSeq/paired_end/mixed_strand/RNAseq/1 || jfjlaros || H.sapiens || Normal RNASeq || - || |
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\ No newline at end of file |