... | ... | @@ -22,7 +22,6 @@ Prints a cluster queue summary |
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#!div class=important style="border: 2pt solid; text-align: left"
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vill@shark:~$ qconf -sql
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Prints only the available queues
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... | ... | @@ -38,50 +37,47 @@ Prints only the available queues |
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qlogin.q
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Currently these queues are available for the following purposes:
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||12hr-KG.q ||Clinical Genetics 12 hour run time high priority queue runs on catshark, sleepershark and iridescentshark ||
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||2hr-all.q || A queue with maximum runtime of 2 hours for everyone to use ||
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||LGTC_HiSeq.q ||Human Genetics LGTC !HiSeq sequence queue, only uses the baskingshark ||
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||!MolEpi_HighMem.q ||!MolEpi High memory queue, only uses the wobbegongshark, only !MolEpi can use this queue||
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||all.q ||Everyone can use this queue only the basking shark cannot be used with this queue, can only be used for batch jobs||
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||qlogin.q||Everyone can use this queue, this queue is only for interactive jobs, and runs on koala and kiribati||
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||notebook.q || Everyone can use this queue for their ipython notebook [IPythonNotebook](https://humgenprojects.lumc.nl/trac/shark/wiki/IPythonNotebook)
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||mpi.q || Everyone can use this queue if you need to run MPI jobs [MPICH2](https://humgenprojects.lumc.nl/trac/shark/wiki/MPICH2)
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Find the executions hosts for a queue (in this example the LGTC.q) the first command finds the hostlist for the queue.
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#!div class=important style="border: 2pt solid; text-align: left"
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qconf -sq all.q |grep hostlist | sed 's/[ ]\+/:/g' | cut -d : -f2
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@allqueue
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# Currently these queues are available for the following purposes:
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The second command will print all the hosts in the hostlist
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|queue name|Description|
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|----------|-----------|
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|all.q|Everyone can use this queue only the basking shark cannot be used with this queue, can only be used for batch jobs|
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|qlogin.q|Everyone can use this queue, this queue is only for interactive jobs, and runs on koala and kiribati|
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|notebook.q|Everyone can use this queue for their ipython notebook [IPythonNotebook](https://humgenprojects.lumc.nl/trac/shark/wiki/IPythonNotebook)|
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## Find the executions hosts for a queue (in this example the LGTC.q) the first command finds the hostlist for the queue.
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#!div class=important style="border: 2pt solid; text-align: left"
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qconf -shgrp @allqueue
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`qconf -sq all.q |grep hostlist | sed 's/[ ]\+/:/g' | cut -d : -f2`
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group_name @allqueue
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hostlist angelshark.cluster.loc blacktipshark.cluster.loc \
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caribbeanshark.cluster.loc dogfishshark.cluster.loc \
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epauletteshark.cluster.loc frilledshark.cluster.loc \
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greatwhiteshark.cluster.loc hammerheadshark.cluster.loc \
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kitefinshark.cluster.loc lemonshark.cluster.loc makoshark.cluster.loc \
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megamouthshark.cluster.loc nightshark.cluster.loc \
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pygmeshark.cluster.loc threshershark.cluster.loc \
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tigershark.cluster.loc zebrashark.cluster.loc
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This will show : @allhosts
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Print all hosts in every hostlist
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## The second command will print all the hosts in the hostlist
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`qconf -shgrp @allqueue`
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#!sh
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for i in `qconf -shgrpl` ; do qconf -shgrp $i ; done
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````
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group_name @allqueue
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hostlist baskingshark.researchlumc.nl blueshark.researchlumc.nl \
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camouflageshark.researchlumc.nl caribbeanshark.researchlumc.nl \
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chimerashark.researchlumc.nl cowshark.researchlumc.nl \
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dogfishshark.researchlumc.nl elephantshark.researchlumc.nl \
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epauletteshark.researchlumc.nl frilledshark.researchlumc.nl \
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goblinshark.researchlumc.nl greatwhiteshark.researchlumc.nl \
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greenlandshark.researchlumc.nl kitefinshark.researchlumc.nl \
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lemonshark.researchlumc.nl leopardshark.researchlumc.nl \
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makoshark.researchlumc.nl megamouthshark.researchlumc.nl \
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nightshark.researchlumc.nl pygmeshark.researchlumc.nl \
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reefshark.researchlumc.nl sawshark.researchlumc.nl \
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swellshark.researchlumc.nl threshershark.researchlumc.nl \
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tigershark.researchlumc.nl whaleshark.researchlumc.nl \
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whorltoothshark.researchlumc.nl wobbegongshark.researchlumc.nl \
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zebrashark.researchlumc.nl
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````
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## Print all hosts in every hostlist
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``for i in `qconf -shgrpl` ; do qconf -shgrp $i ; done``
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## Which queue do I use?
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I you don't give a queue to run on with your job the Open Grid Schedular will use an available queue where you have access to.
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I you don't give a queue to run on with your job the Open Grid Scheduler will use an available queue where you have access to.
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If you use the -q queue name option then you use a so called hard_queue list and that queue will be used.
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Add there "For an explanation about how/when to use checkpointing see the [Using the checkpointing queue](CheckpointingQueue) page.
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