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# Primairly function of the Shark cluster
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----
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**The Shark cluster has been setup to analyze Next Generation Sequencing (NGS) data, coming from: **
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* !Illumina/Solex GAII, !HiSeq
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* Helicos
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* Roche 454
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* Pacific Biosciences, !PacBio RS
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* Ion Torrent
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**Shark has been setup and optimized to run the following software: **
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* BWA
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* bowtie
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* helisphere
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* fastx_toolkit
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* GAPSS
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* mrfast
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* picard tools
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* rmap
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* samtools
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* stampy
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* Tophat
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* Cufflinks
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* Eland
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* GAPipeline
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* Varscan
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* Velvet(only for very small genomes)
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* smrtportal (!PacBio)
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Running other software is not the primary task for the Shark cluster, system wide environment variables are only set for NGS software to run properly. Anything that will jeopardize the primary function of the Shark cluster will be forbidden. |