Examples.md

@@ -75,7 +75,7 @@ Your job will get a number which you need in order to track the progress, errors
 job-ID  prior   name       user         state submit/start at     queue         slots ja-task-ID
 
 ------------------------------------------------------------------------------------------------------
-517    0.00000 my_first_j chiel        qw    06/09/2010 13:24:15                1
+517    0.00000 my_first_j username        qw    06/09/2010 13:24:15                1
 ````
 `qstat -ext`
 
@@ -200,48 +200,3 @@ If your job needs more memory then the default limit you need to specify that as
 
 `qsub -l h_vmem=12G test.sh`
 
-
-### Checkpointing example
-checkpoint_program.R:
-
-    args<-commandArgs(TRUE)
-    outfile<-args[1] #"test_levels1.out"
-    end<-10000
-    start<-1+as.integer(args[2])
-    if (start==1) write(c("i", "root_i"), file=outfile,ncol=2)
-    for (idx in start:end) {
-    	res<-c(i=idx,root=sqrt(idx))
-    	write(res, file=outfile,ncol=2,append=TRUE)
-}
-}}}
-qsub example file: save this example checkpoint_test.sh 
-
-    #!/bin/bash
-    #$ -cwd
-    #$ -V
-    #$ -S /bin/bash
-
-outfile=checkpoint_test.out
-if [-e $outfile ]()
-then
-	wc_out=`wc -l $outfile`
-	wcount=${wc_out%% *}
-	#echo $wcount
-	count=$(($wcount - 1)) #1 for the header and 1 for starting at 1
-else
-	count=0
-fi
-R --vanilla --slave -f checkpoint_program.R --args $outfile $count
-}}}
-We can submit this job as:
-
-    #!div class=important style="border: 2pt solid; text-align: left"
-    qsub -q subordinate.q -ckpt check_userdefined ./checkpoint_test.sh
-
-Try to suspend this job with:
-
-    #!div class=important style="border: 2pt solid; text-align: left"
-    qmod -s <job id>
-
-You will then see a Rq(rerunning and queued) and then a Rr(rerunning). Your job will start from the last output it wrote.
-