Commits · ec1680db94bc1e849f599a0586881e2affe1c492 · Mirrors / mutalyzer

Sep 30, 2013

Fix HGVS syntax description in name/syntax checker forms · ec1680db

Vermaat authored 11 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@747 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

ec1680db

Sep 19, 2013

Add tests for JSON webservice using POST requests · b91d657b

Vermaat authored 11 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@746 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

b91d657b

Sep 18, 2013

Release 2.0.beta-28 · 515fd45d

Vermaat authored 11 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@744 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

515fd45d

Update unit tests to pass with latest NCBI data · 4ddd28ad

Vermaat authored 11 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@743 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4ddd28ad

Require Python werkzeug to be installed · b75fd9ae

Vermaat authored 11 years ago

This enables using POST requests for the JSON webservice.


git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@742 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

b75fd9ae

Jul 04, 2013

Fix missing fields in example config · e1aeaa14

Vermaat authored 11 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@703 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

e1aeaa14

Jun 18, 2013

Open development for 2.0.beta-28 · 0bc53d34

Vermaat authored 11 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@701 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

0bc53d34

Release 2.0.beta-27 · 5d42d883

Vermaat authored 11 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@699 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

5d42d883

Jun 12, 2013

Limited cache lifetime for mrna-protein links · 5c5f8dea

Vermaat authored 11 years ago

Rework the caching of transcript<->protein accession number links. If no
link is reported by the NCBI, this is now also cached. For these type of
negative links and the normal links, separate cache lifetimes can be
defined.

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@698 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

5c5f8dea

May 21, 2013

Paper: exon deletions and fuzzy offsets · 4762914d

Vermaat authored 11 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@697 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4762914d

Apr 09, 2013

No weird instance attribute names starting with double underscore · 206c51d9
Vermaat authored 12 years ago
```
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@694 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
```
206c51d9

Switch order of migrations 011 and 012 · 6a2299a3

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@693 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

6a2299a3

Open development for 2.0.beta-27 · fe567b67

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@692 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

fe567b67

Release 2.0.beta-26 · 3076481a

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@690 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

3076481a

Add help link for each module in the web interface · 304a8ab5

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@689 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

304a8ab5

Apr 08, 2013

Proposal for student project: MoBiLe 2013 · 945a659b

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@688 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

945a659b

Mar 26, 2013

Keep service usage counts in database · 6000f9fa

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@687 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

6000f9fa

Merge /branches/mapping-mouse:r682-684 · ab633aed

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@685 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

ab633aed

Configure default mapping database · 3fbd64c5

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mapping-mouse@684 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

3fbd64c5

Mar 25, 2013

Add mm10 (Mouse) transcript mappings · d27bbd08

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mapping-mouse@683 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

d27bbd08

Create mapping-mouse branch from trunk · 4052e854

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mapping-mouse@682 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4052e854

Merge /branches/lrg-schema-update:r653-679 · a5afeb94

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@680 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

a5afeb94

Update LRG parser for new format · 3e0f15b5

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/lrg-schema-update@679 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

3e0f15b5

Merge /trunk:r653-677 · 68c42247

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/lrg-schema-update@678 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

68c42247

Complete previous commit · c427e6ec

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@677 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

c427e6ec

Transcript version update in unit tests · c519105f

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@676 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

c519105f

Open development for 2.0.beta-26 · 24024e0e

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@675 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

24024e0e

Release 2.0.beta-25 · 1c240962

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@673 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

1c240962

Mar 05, 2013

Note that slicing by gene uses current assembly · 69a30937

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@672 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

69a30937

Feb 25, 2013

Warning on non-adjacent exons in transcript reference · bd3ce1d1

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@671 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

bd3ce1d1

Feb 19, 2013

Move documentation to Trac · e752fa3f

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@670 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

e752fa3f

Feb 13, 2013

Minor monitor update · 7ef7dc4a

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@669 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

7ef7dc4a

Feb 12, 2013

Include exon table for selected transcript in webservice · 8590f9b9

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@668 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

8590f9b9

Use WNOMRNA_OTHER when appropriate (fixes #132) · c2b54871

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@667 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

c2b54871

Jan 22, 2013

Temporarily disable frameshift detection (#124) · 9a993899

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@666 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

9a993899

Jan 14, 2013

All hg19 mappings are noted as comments · ea2fb9db

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@665 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

ea2fb9db

Allow selectors on transcript references in position converter · 48a0b151
Vermaat authored 12 years ago
```
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@664 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
```
48a0b151

Accept trailing tabs in batch input · 2195ace0

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@663 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

2195ace0

SOAP example client for getGeneName · 9e872112

Vermaat authored 12 years ago

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@662 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

9e872112

Jan 07, 2013

Install script fixes · a84b70ea

Vermaat authored 12 years ago

- Syntax error in install script.
- Add missing 'organelle' value for a database record.
- Debian Wheezy python-mysql does not have the auto reconnect option, so
  disable it by default.
- MySQL 'grant' statements need host defined.



git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@661 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

a84b70ea