Accept trailing tabs in batch input

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@663 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

mutalyzer/File.py

@@ -355,7 +355,7 @@ class File() :
                     ret.append("~!InputFields: " + '|'.join(job))
                     ret.extend(['~!' for _ in range(columns - 1)])
                 else:
-                    ret.extend(job)
+                    ret.extend([j or '~!' for j in job])
         #else
 
         if not ret:

mutalyzer/website.py

@@ -1069,6 +1069,10 @@ class BatchProgress:
         D = Db.Batch()
         left = D.entriesLeftForJob(jobID)
         percentage = int(100 - (100 * left / float(total)))
+        if percentage < 0:
+            percentage = 0
+        elif percentage > 100:
+            percentage = 100
         if i.ajax:
             if percentage == 100:
                 #download url, check if file still exists

tests/test_website.py

@@ -430,6 +430,17 @@ class TestWSGI():
                     size=len(variants),
                     header='Input\tErrors | Messages')
 
+    def test_batch_namechecker_extra_tab(self):
+        """
+        Submit the batch name checker form with lines ending with tab
+        characters.
+        """
+        variants=['AB026906.1(SDHD):g.7872G>T\t']
+        self._batch('NameChecker',
+                    file='\n'.join(variants),
+                    size=len(variants),
+                    header='Input\tErrors | Messages')
+
     def test_batch_syntaxchecker(self):
         """
         Submit the batch syntax checker form.