SOAP example client for getGeneName

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@662 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

extras/soap-tools/getGeneName.py

+#!/usr/bin/env python
+"""
+Get gene name from a transcript accession number.
+
+Usage:
+  {command} transcript [build]
+
+  transcript: Transcript accession number, e.g. 'NM_002001.2'.
+  build: Human genome build, 'hg18' or 'hg19' (default: 'hg19').
+
+The transcript gene name is retrieved from the Mutalyzer SOAP web service and
+printed to standard output.
+"""
+
+
+from mutalyzer.util import monkey_patch_suds; monkey_patch_suds()
+
+import sys
+from suds.client import Client
+
+from mutalyzer.util import format_usage
+
+
+WSDL_LOCATION = 'http://localhost/mutalyzer/services/?wsdl'
+
+
+def main(transcript, build='hg19'):
+    """
+    Get transcript gene name and print it to standard output.
+    """
+    service = Client(WSDL_LOCATION, cache=None).service
+    result = service.getGeneName(build, transcript)
+
+    if result:
+        print str(result)
+
+
+if __name__ == '__main__':
+    if len(sys.argv) < 2:
+        print format_usage()
+        sys.exit(1)
+    main(*sys.argv[1:])