- Jan 30, 2015
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Vermaat authored
Many genbank reference files contain more than one gene, especially slices from an assembly. Some of these genes may be incomplete in the reference file (i.e., either start or end exceeds the outer coordinates). We cannot really do anything with these genes, so we discard them during parsing.
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Vermaat authored
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Vermaat authored
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Vermaat authored
Add getGeneLocation webservice method
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Vermaat authored
Given a gene symbol and optional genome build, this returns the location of the gene. Primary motivation for this is LOVD, where it will be used in combination with sliceChromsome as an alternative for sliceChromosomeByGene which only works on the fixed Ensembl genome build.
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- Jan 09, 2015
- Dec 16, 2014
- Dec 11, 2014
- Dec 10, 2014
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Vermaat authored
Compilation of developer documentation on Read The Docs
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Vermaat authored
We use a separate `doc/requirements.txt` file for building the documentation. Since on Read The Docs where we cannot install packages depending on C libraries, we mock these packages in `doc/conf.py` and omit them from the requirements.
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- Dec 09, 2014
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Vermaat authored
Add Travis CI configuration
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https://travis-ci.org/Vermaat authored
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- Dec 08, 2014
- Nov 24, 2014
- Nov 19, 2014
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Vermaat authored
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