From bb73f36f973763b51b7f216f9a6436b91feaf7e5 Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Thu, 19 Apr 2012 10:22:12 +0000
Subject: [PATCH] Further improvements to NBIC poster
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@515 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
---
doc/Poster_24_25-04-12_NBIC_Mutalyzer2/poster.tex | 15 ++++++++-------
1 file changed, 8 insertions(+), 7 deletions(-)
diff --git a/doc/Poster_24_25-04-12_NBIC_Mutalyzer2/poster.tex b/doc/Poster_24_25-04-12_NBIC_Mutalyzer2/poster.tex
index ef753fdf..2bc1ff42 100644
--- a/doc/Poster_24_25-04-12_NBIC_Mutalyzer2/poster.tex
+++ b/doc/Poster_24_25-04-12_NBIC_Mutalyzer2/poster.tex
@@ -24,7 +24,7 @@
Unambiguous and correct sequence variant descriptions are of utmost
importance for DNA diagnostics. Descriptions can be checked and corrected
with the {\em Mutalyzer sequence variation nomenclature checker}
- (Fig.~\ref{figure:namecheck}) (\color{red}\bt{http://www.mutalyzer.nl/}\color{LUMCBlue})
+ (Fig.~\ref{figure:namecheck}) (\color{red}\bt{https://mutalyzer.nl/}\color{LUMCBlue})
following the Human Genome Variation Society (HGVS) sequence variant
nomenclature recommendations~\cite{HGVS}.
@@ -73,14 +73,14 @@
\vspace{1cm}
- \centerline{\texttt{\textcolor{blue}{A}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}~~\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}~\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{blue}{A}}}
- \centerline{\texttt{|||||~~|||||||||||~||||||||~|||||||||~||||}}
- \centerline{\texttt{\textcolor{blue}{A}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{red}{T}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}~\textcolor{red}{T}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{green}{C}\textcolor{orange}{G}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{blue}{A}}}
+ \texttt{~~~\textcolor{blue}{A}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}~~\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}~\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{blue}{A}~~~}reference\\
+ \texttt{~~~|||||~~|||||||||||~||||||||~|||||||||~||||}\\
+ \texttt{~~~\textcolor{blue}{A}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{red}{T}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}~\textcolor{red}{T}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{green}{C}\textcolor{orange}{G}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{red}{T}\textcolor{red}{T}\textcolor{blue}{A}\textcolor{orange}{G}\textcolor{orange}{G}\textcolor{blue}{A}\textcolor{green}{C}\textcolor{blue}{A}\textcolor{blue}{A}~~~}variant
\vspace{1cm}
- By comparing the sequences, the following HGVS description will be
- extracted: \texttt{g.[5\_6insTT;17del;26A>C;35dup]}
+ By comparing the sequences, the following HGVS description of the variant
+ sequence will be extracted: \texttt{g.[5\_6insTT;17del;26A>C;35dup]}
\vspace{1cm}
@@ -122,7 +122,8 @@
As future work we plan to implement description extraction from reference
sequences either identified by accession number or manually uploaded.
This will enable, for example, easy construction of descriptions for the
- difference between two transcript reference sequences.
+ difference between different versions of reference sequence, either
+ genomic or transcript.
}
\colorBlock{BlueBg}{Name Checking}{1}{
\begin{figure}
--
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