Commits · ffc5158b4e2df43d33d1abaa009384c6d12c253f · Mirrors / biopet.biopet

Feb 03, 2015
- No null returns at files and strings · ffc5158b
  Peter van 't Hof authored 10 years ago
  
  ffc5158b
- Name change · 29f9b30f
  Peter van 't Hof authored 10 years ago
  
  29f9b30f
- Implemented addMultisampleJobs method · 5f8a8375
  Peter van 't Hof authored 10 years ago
  
  5f8a8375
- Added addMultisampleJobs method · 944b9af0
  Peter van 't Hof authored 10 years ago
  
  944b9af0
- Fix for -sample commandline argument · ebe731f3
  Peter van 't Hof authored 10 years ago
  
  ebe731f3
Jan 30, 2015
- Fix verion to version · e0cd4cdd
  Wai Yi Leung authored 10 years ago
  
  e0cd4cdd
- Aligner BWA typo and Mapping clean paths · ccd0ed71
  Wai Yi Leung authored 10 years ago
  
  ccd0ed71
- fixed output_dir name bug · ea210687
  Sander van der Zeeuw authored 10 years ago
  
  ea210687
- Add notes on input - output compression · a08964e0
  bow authored 10 years ago
  
  a08964e0
- Use AsyncFastqWriter instead of BasicFastqWriter · 33f6e6d7
  bow authored 10 years ago
  
  33f6e6d7
Jan 29, 2015
- Add output annotation to sync tool stats output · 0d3e053a
  bow authored 10 years ago
  
  0d3e053a
- Use sync tool and update its wrapper · 96d44ee9
  bow authored 10 years ago
  
  96d44ee9
- Remove old sync script and its wrapper · 32d55edd
  bow authored 10 years ago
  
  32d55edd
- Add version comment · 32731cbe
  Peter van 't Hof authored 10 years ago
  
  32731cbe
- bug fixes for macs2 wrapper · dbff8c07
  Sander van der Zeeuw authored 10 years ago
  
  dbff8c07
- Fix args · 41264b83
  Peter van 't Hof authored 10 years ago
  
  41264b83
- Fix scala docs format error · 2d0f6129
  Peter van 't Hof authored 10 years ago
  
  2d0f6129
- Added wigToBigWig extension · b7ace90c
  Peter van 't Hof authored 10 years ago
  
  b7ace90c
Jan 28, 2015
- Update on the pipeline, streamline and minimize the required arguments taken from the commandline · 8a670218
  Wai Yi Leung authored 10 years ago
  
  8a670218
- fix scala docs (again) · b61616ea
  Peter van 't Hof authored 10 years ago
  
  b61616ea
- Fix scala docs · 9371bf0f
  Peter van 't Hof authored 10 years ago
  
  9371bf0f
- Renaming values · 33f456b9
  Peter van 't Hof authored 10 years ago
  
  33f456b9
- Renaming values · bbd005c3
  Peter van 't Hof authored 10 years ago
  
  bbd005c3
Jan 27, 2015
- Switch Gatk pipeline and Basty to new multisample classes · 91e72434
  Peter van 't Hof authored 10 years ago
  
  91e72434
- Renames and adds scala docs · 49ba8c53
  Peter van 't Hof authored 10 years ago
  
  49ba8c53
- Switch defaults to a def instead of a var · fed34592
  Peter van 't Hof authored 10 years ago
  
  fed34592
- CNV pipeline for Exome · 45776fbc
  Wai Yi Leung authored 10 years ago
  
  45776fbc
- Added warning on use of old argument · 405ecae2
  Peter van 't Hof authored 10 years ago
  
  405ecae2
- Rename function · 2b62b86b
  Peter van 't Hof authored 10 years ago
  
  2b62b86b
- Added implicit Option[File] and Option[String] · 66bebf8a
  Peter van 't Hof authored 10 years ago
  
  66bebf8a
- 2 extra contructors · 66224274
  Peter van 't Hof authored 10 years ago
  
  66224274
- Remove outputDir from arguments · aeb3c024
  Peter van 't Hof authored 10 years ago
  
  aeb3c024
- Fix defaults for booleans · c05ab685
  Peter van 't Hof authored 10 years ago
  
  c05ab685
- Added init functions · 715d7f82
  Peter van 't Hof authored 10 years ago
  
  715d7f82
- Switch to abstract init function · 1410432c
  Peter van 't Hof authored 10 years ago
  
  1410432c
Jan 26, 2015
- Moved init of vars · 7911ce0e
  Peter van 't Hof authored 10 years ago
  
  7911ce0e
Jan 23, 2015
- First wrappers for kopisu #106 · 136e28ce
  Wai Yi Leung authored 10 years ago
  
  136e28ce
Jan 21, 2015
- Added defaultSample and defaultLibrary · 789bfa8e
  Peter van 't Hof authored 10 years ago
  
  789bfa8e
- Added a template as example · a878479e
  Peter van 't Hof authored 10 years ago
  
  a878479e
- Change sample to var · 55378379
  Peter van 't Hof authored 10 years ago
  
  55378379