Commit c05ab685 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix defaults for booleans

parent dd732af4
......@@ -48,9 +48,9 @@ class Bowtie(val root: Configurable) extends BiopetCommandLineFunction {
var seedmms: Option[Int] = config("seedmms")
var k: Option[Int] = config("k")
var m: Option[Int] = config("m")
var best: Boolean = config("best")
var best: Boolean = config("best", default = false)
var maxbts: Option[Int] = config("maxbts")
var strata: Boolean = config("strata")
var strata: Boolean = config("strata", default = false)
var maqerr: Option[Int] = config("maqerr")
def cmdLine = {
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