Commit a08964e0 authored by bow's avatar bow
Browse files

Add notes on input - output compression

parent 33f6e6d7
......@@ -229,9 +229,13 @@ object FastqSync extends ToolCommand {
class OptParser extends AbstractOptParser {
// TODO: make output format independent from input format?
head(
s"""
|$commandName - Sync paired-end FASTQ files
|$commandName - Sync paired-end FASTQ files.
|
|This tool works with gzipped or non-gzipped FASTQ files. The output
|file will be gzipped when the input is also gzipped.
""".stripMargin)
opt[File]('r', "ref") required () valueName "<fastq>" action { (x, c) =>
......
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