Commits · ed7e958809715978afae5b5adc2f91bc50dc013c · Mirrors / biopet.biopet

Sep 09, 2015
- Possible to change output of seqstat to a file instead of stdout · ed7e9588
  Peter van 't Hof authored 9 years ago
  
  ed7e9588
- Change vars to vals, possible because method 'addTagresultToTaglib' is now changed · 1c155c9b
  Peter van 't Hof authored 9 years ago
  
  1c155c9b
- Change logging to logger.info · 9b465609
  Peter van 't Hof authored 9 years ago
  
  9b465609
- Fix ode style · a32bc102
  Peter van 't Hof authored 9 years ago
  
  a32bc102
- Auto style fixes · 782140f5
  Sander Bollen authored 9 years ago
  
  782140f5
- finishing up VcfStatsTEst · e8b087a1
  Sander Bollen authored 9 years ago
  
  e8b087a1
- add testCheckGeneral · 74a7b056
  Sander Bollen authored 9 years ago
  
  74a7b056
Sep 08, 2015
- sort test · e119b397
  Sander Bollen authored 9 years ago
  
  e119b397
- validation of wiggle track options · 9a5d5343
  Sander Bollen authored 9 years ago
  
  9a5d5343
- testing main and valuefromtsv · 9a9f6f66
  Sander Bollen authored 9 years ago
  
  9a9f6f66
- testing map mergers · 6a21310f
  Sander Bollen authored 9 years ago
  
  6a21310f
- create test stubs · 1dae06f5
  Sander Bollen authored 9 years ago
  
  1dae06f5
- Validations and text messages for VcfStats optparser · d5b713e0
  Sander Bollen authored 9 years ago
  
  d5b713e0
- fix for #200 · af8d9983
  Sander Bollen authored 9 years ago
  
  af8d9983
Sep 07, 2015
- SageCreateTagCountsTest · 895a1f22
  Sander Bollen authored 9 years ago
  
  895a1f22
- fix SageCreateTagCounts · 6d2b737a
  Sander Bollen authored 9 years ago
  
  6d2b737a
- autostyle fixes · fed29c72
  Sander Bollen authored 9 years ago
  
  fed29c72
- SageCreateLibraryTest · dca51f45
  Sander Bollen authored 9 years ago
  
  dca51f45
- fixing SageCreateLibrary · ea4e9d7e
  Sander Bollen authored 9 years ago
  
  ea4e9d7e
Sep 03, 2015
- VcfWithVcfTest completion · cfcd6e0e
  Sander Bollen authored 9 years ago
  
  cfcd6e0e
- More tests for VcfWithVcfTest · c4742c8d
  Sander Bollen authored 9 years ago
  
  c4742c8d
- VcfWithVCf refactor · 0499783f
  Sander Bollen authored 9 years ago
  
  0499783f
Aug 31, 2015
- Some extras for VcfWithVcfTest · 20eb2f37
  Sander Bollen authored 9 years ago
  
  20eb2f37
- SummaryToTsvTest · 8a5bf774
  Sander Bollen authored 9 years ago
  
  8a5bf774
- Refactoring SummaryToTsv to make it more testable · d1bd5949
  Sander Bollen authored 9 years ago
  
  Removing extraneous output flag (wasn't used) Better help messages And mode validation
  d1bd5949
Aug 28, 2015
- Adding some todos to seq stat · 81b7da44
  Sander Bollen authored 9 years ago
  
  81b7da44
- getorelse · d3c552a9
  Sander Bollen authored 9 years ago
  
  d3c552a9
- docfix for #196 · 2beabac0
  Sander Bollen authored 9 years ago
  
  2beabac0
- Fix most of #196. Only documentation remaining · 6f49ff05
  Sander Bollen authored 9 years ago
  
  6f49ff05
- Partial #196. Split up in functions. · f4ee1f10
  Sander Bollen authored 9 years ago
  
  f4ee1f10
- Should not forget to add the resources · 01d04462
  Sander Bollen authored 9 years ago
  
  01d04462
- Tests for SamplesTsvToJsonTest. Some of these will fail before #196 is resolved. · 281b9f99
  Sander Bollen authored 9 years ago
  
  281b9f99
- SageFastqCountTest. Not much to do here. · 31bf53d3
  Sander Bollen authored 9 years ago
  
  31bf53d3
- PrefixFastqTest · 3c33ec7e
  Sander Bollen authored 9 years ago
  
  3c33ec7e
Aug 27, 2015
- Various style fixes · 6638216b
  Sander Bollen authored 9 years ago
  
  6638216b
- MpileupToVcfTest · 9ab5109a
  Sander Bollen authored 9 years ago
  
  9ab5109a
- Resources for checkVCfInBam · 27fa86ac
  Sander Bollen authored 9 years ago
  
  27fa86ac
- Merge branch 'develop' into tooltests · 57b85b65
  Sander Bollen authored 9 years ago
  
  57b85b65
- FindRepeatsPacBioTest · 4faa97b2
  Sander Bollen authored 9 years ago
  
  4faa97b2
- More message fixes · 41e0a2ac
  Sander Bollen authored 9 years ago
  
  41e0a2ac