Commit 31bf53d3 authored by Sander Bollen's avatar Sander Bollen
Browse files

SageFastqCountTest. Not much to do here.

parent 3c33ec7e
package nl.lumc.sasc.biopet.tools
import java.io.File
import java.nio.file.Paths
import org.scalatest.Matchers
import org.scalatest.mock.MockitoSugar
import org.scalatest.testng.TestNGSuite
import org.testng.annotations.Test
/**
* Created by ahbbollen on 28-8-15.
*/
class SageCountFastqTest extends TestNGSuite with MockitoSugar with Matchers {
import SageCountFastq._
private def resourcePath(p: String): String = {
Paths.get(getClass.getResource(p).toURI).toString
}
val fq = resourcePath("/paired01a.fq")
@Test
def testMain() = {
val temp = File.createTempFile("out", ".fastq")
val args = Array("-I", fq, "-o", temp.getAbsolutePath)
main(args)
}
}
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