Commit 6638216b authored by Sander Bollen's avatar Sander Bollen
Browse files

Various style fixes

parent 9ab5109a
......@@ -17,7 +17,7 @@ package nl.lumc.sasc.biopet.tools
import java.io.{ File, PrintWriter }
import htsjdk.samtools.{SAMSequenceRecord, SamReaderFactory}
import htsjdk.samtools.{ SAMSequenceRecord, SamReaderFactory }
import htsjdk.samtools.reference.IndexedFastaSequenceFile
import htsjdk.variant.variantcontext.VariantContext
import htsjdk.variant.vcf.VCFFileReader
......
......@@ -65,7 +65,6 @@ class BastyGenerateFastaTest extends TestNGSuite with MockitoSugar with Matchers
val father = mock[Args]
when(father.sampleName) thenReturn "Father_7006506"
getMaxAllele(record)(child) shouldBe "C-"
getMaxAllele(record)(father) shouldBe "CA"
......
......@@ -33,7 +33,7 @@ class BiopetFlagstatTest extends TestNGSuite with MockitoSugar with Matchers {
processor.loadRecord(record)
@Test
def testReport()= {
def testReport() = {
processor.report shouldBe Source.fromFile(report).mkString
}
......
......@@ -18,7 +18,7 @@ package nl.lumc.sasc.biopet.tools
import java.io.File
import java.nio.file.Paths
import htsjdk.samtools.{SamReaderFactory, SamReader}
import htsjdk.samtools.{ SamReaderFactory, SamReader }
import htsjdk.variant.vcf.VCFFileReader
import org.scalatest.Matchers
import org.scalatest.mock.MockitoSugar
......
......@@ -36,6 +36,4 @@ class FastqSplitterTest extends TestNGSuite with MockitoSugar with Matchers {
main(args)
}
}
......@@ -3,7 +3,7 @@ package nl.lumc.sasc.biopet.tools
import java.io.File
import java.nio.file.Paths
import htsjdk.samtools.{SamReaderFactory, QueryInterval}
import htsjdk.samtools.{ SamReaderFactory, QueryInterval }
import nl.lumc.sasc.biopet.tools.FastqSplitter._
import org.scalatest.Matchers
import org.scalatest.mock.MockitoSugar
......@@ -60,5 +60,4 @@ class FindRepeatsPacBioTest extends TestNGSuite with MockitoSugar with Matchers
result.ins shouldEqual Nil
}
}
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