Commits · df98d70acd6b325ccd7b14efece5d3f6ffecbbca · Mirrors / biopet.biopet

Jul 30, 2014
- Fix bug in Flexiprep python summary script · df98d70a
  bow authored 10 years ago
  
  df98d70a
Jul 29, 2014
- Fix flexiprep summary json parsing · 2b595c2c
  bow authored 10 years ago
  
  2b595c2c
- Fix on output directories of sha1sum and seqstat · 0aabeb73
  bow authored 10 years ago
  
  0aabeb73
- Fix Ln import with new namespace · b121e619
  bow authored 10 years ago
  
  b121e619
- Flexiprep passes jobs to new summary · 397a0a5d
  Peter van 't Hof authored 10 years ago
  
  397a0a5d
- Use relative paths in empty cutadapt commands · 7731bd62
  bow authored 10 years ago
  
  7731bd62
- Use relative symlinks by default in Flexiprep final files · deac9640
  bow authored 10 years ago
  
  deac9640
- changed function to extensions · dd4f0175
  Peter van 't Hof authored 10 years ago
  
  dd4f0175
- Seqstat now uses quality type data · 3501d2eb
  Peter van 't Hof authored 10 years ago
  
  3501d2eb
- Function to get encoding of the fastq file, replaces python script · f0f070f7
  Peter van 't Hof authored 10 years ago
  
  f0f070f7
Jul 28, 2014
- Seqstat now uses quality type data · 8e67bf4f
  Peter van 't Hof authored 10 years ago
  
  8e67bf4f
- Update scripts default location to follow Maven convention · 210c6b69
  bow authored 10 years ago
  
  210c6b69
- Update flexiprep summary file name · c6b4115d
  bow authored 10 years ago
  
  c6b4115d
- Output cutadapt statistics correctly in summary files · 556fc8c1
  bow authored 10 years ago
  
  556fc8c1
- Fix on fastqc jobs · cde8f1a6
  Peter van 't Hof authored 10 years ago
  
  cde8f1a6
- Revert "Fix on fastqc jobs" · 373dbb5c
  Peter van 't Hof authored 10 years ago
  
  This reverts commit 5945ab1746a433f4c9c2100176934d7ee86c38a2.
  373dbb5c
- Fix on fastqc jobs · 613343f7
  Peter van 't Hof authored 10 years ago
  
  613343f7
- Switch to functions · e7f818e2
  Peter van 't Hof authored 10 years ago
  
  e7f818e2
- Fix on output variable · 1395457c
  Peter van 't Hof authored 10 years ago
  
  1395457c
- Add cutadapt statistics output to flexiprep runs · d3a453a1
  bow authored 10 years ago
  
  d3a453a1
Jul 27, 2014
- First version of summary of flexiprep in queue/scala · e6f07f76
  Peter van 't Hof authored 10 years ago
  
  e6f07f76
- Function to get encoding of the fastq file, replaces python script · 2a2a37fd
  Peter van 't Hof authored 10 years ago
  
  2a2a37fd
- Fix on output variable · 096d8a0e
  Peter van 't Hof authored 10 years ago
  
  096d8a0e
- - Moved constructor to function itself · 16a08dfd
  Peter van 't Hof authored 10 years ago
  
  - Add extract option to fastqc
  16a08dfd
Jul 23, 2014
- Update Sickle wrapper for consistency · d58df8a4
  bow authored 10 years ago
  
  d58df8a4
- Update imports style order · bf372d9a
  bow authored 10 years ago
  
  bf372d9a
- Update code style using scalariform · 02b571a4
  bow authored 10 years ago
  
  02b571a4
Jul 22, 2014
- Changes in config class · 6294de9f
  Peter van 't Hof authored 10 years ago
  
  6294de9f
Jul 21, 2014
- Spelling error · 95ba716f
  Peter van 't Hof authored 10 years ago
  
  95ba716f
- Collected all gatk pipelines/artifacts into 1 maven project · 2f47af7e
  Peter van 't Hof authored 10 years ago
  
  2f47af7e
- Collected all gatk pipelines/artifacts into 1 maven project · 79435a29
  Peter van 't Hof authored 10 years ago
  
  79435a29
Jul 18, 2014
- update for Queue/GATK 3.2-2 · 62ed4c90
  Peter van 't Hof authored 10 years ago
  
  62ed4c90
Jul 15, 2014
- Update to Queue/GATK 3.2 · 0a33b3d3
  Peter van 't Hof authored 10 years ago
  
  0a33b3d3
- intial unzipped file is intermediate now · 2e45f064
  Peter van 't Hof authored 10 years ago
  
  2e45f064
- Option to skip summary · 9be7a784
  Peter van 't Hof authored 10 years ago
  
  9be7a784
Jul 03, 2014
- codestyle fix · e626880a
  Peter van 't Hof authored 10 years ago
  
  e626880a
- changed version command to def · c340b559
  Peter van 't Hof authored 10 years ago
  
  c340b559
Jun 27, 2014
- fix analysisName on Ln · 27db54a8
  Peter van 't Hof authored 10 years ago
  
  27db54a8
- Added chunking for mapping · b7690fca
  Peter van 't Hof authored 10 years ago
  
  b7690fca
Jun 26, 2014
- fixed call to sub pipeline · 6090fa33
  Peter van 't Hof authored 10 years ago
  
  6090fa33