Commit d58df8a4 authored by bow's avatar bow
Browse files

Update Sickle wrapper for consistency

parent bf372d9a
......@@ -11,25 +11,25 @@ import nl.lumc.sasc.biopet.core.config._
class Sickle(val root: Configurable) extends BiopetCommandLineFunction {
@Input(doc = "R1 input")
var input_R1: File = null
var input_R1: File = _
@Input(doc = "R2 input", required = false)
var input_R2: File = null
var input_R2: File = _
@Input(doc = "qualityType file", required = false)
var qualityTypeFile: File = _
@Output(doc = "R1 output")
var output_R1: File = null
var output_R1: File = _
@Output(doc = "R2 output", required = false)
var output_R2: File = null
var output_R2: File = _
@Output(doc = "singles output", required = false)
var output_singles: File = null
var output_singles: File = _
@Output(doc = "stats output")
var output_stats: File = null
var output_stats: File = _
executable = config("exe", default = "sickle")
var qualityType: String = config("qualitytype")
......
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