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biopet.biopet
Commits
d58df8a4
Commit
d58df8a4
authored
10 years ago
by
bow
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Update Sickle wrapper for consistency
parent
bf372d9a
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flexiprep/src/main/scala/nl/lumc/sasc/biopet/function/fastq/Sickle.scala
+6
-6
6 additions, 6 deletions
...ain/scala/nl/lumc/sasc/biopet/function/fastq/Sickle.scala
with
6 additions
and
6 deletions
flexiprep/src/main/scala/nl/lumc/sasc/biopet/function/fastq/Sickle.scala
+
6
−
6
View file @
d58df8a4
...
...
@@ -11,25 +11,25 @@ import nl.lumc.sasc.biopet.core.config._
class
Sickle
(
val
root
:
Configurable
)
extends
BiopetCommandLineFunction
{
@Input
(
doc
=
"R1 input"
)
var
input_R1
:
File
=
null
var
input_R1
:
File
=
_
@Input
(
doc
=
"R2 input"
,
required
=
false
)
var
input_R2
:
File
=
null
var
input_R2
:
File
=
_
@Input
(
doc
=
"qualityType file"
,
required
=
false
)
var
qualityTypeFile
:
File
=
_
@Output
(
doc
=
"R1 output"
)
var
output_R1
:
File
=
null
var
output_R1
:
File
=
_
@Output
(
doc
=
"R2 output"
,
required
=
false
)
var
output_R2
:
File
=
null
var
output_R2
:
File
=
_
@Output
(
doc
=
"singles output"
,
required
=
false
)
var
output_singles
:
File
=
null
var
output_singles
:
File
=
_
@Output
(
doc
=
"stats output"
)
var
output_stats
:
File
=
null
var
output_stats
:
File
=
_
executable
=
config
(
"exe"
,
default
=
"sickle"
)
var
qualityType
:
String
=
config
(
"qualitytype"
)
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