Commits · cde8f1a6c35911120d75e8e3b3f4badb1c4c9562 · Mirrors / biopet.biopet

Jul 28, 2014
- Fix on fastqc jobs · cde8f1a6
  Peter van 't Hof authored 10 years ago
  
  cde8f1a6
- Revert "Fix on fastqc jobs" · 373dbb5c
  Peter van 't Hof authored 10 years ago
  
  This reverts commit 5945ab1746a433f4c9c2100176934d7ee86c38a2.
  373dbb5c
- Fix on fastqc jobs · 613343f7
  Peter van 't Hof authored 10 years ago
  
  613343f7
- Fix on output variable · 1395457c
  Peter van 't Hof authored 10 years ago
  
  1395457c
- Add cutadapt statistics output to flexiprep runs · d3a453a1
  bow authored 10 years ago
  
  d3a453a1
Jul 27, 2014
- - Moved constructor to function itself · 16a08dfd
  Peter van 't Hof authored 10 years ago
  
  - Add extract option to fastqc
  16a08dfd
Jul 23, 2014
- Update Sickle wrapper for consistency · d58df8a4
  bow authored 10 years ago
  
  d58df8a4
- Update imports style order · bf372d9a
  bow authored 10 years ago
  
  bf372d9a
- Update code style using scalariform · 02b571a4
  bow authored 10 years ago
  
  02b571a4
Jul 22, 2014
- Changes in config class · 6294de9f
  Peter van 't Hof authored 10 years ago
  
  6294de9f
Jul 21, 2014
- Spelling error · 95ba716f
  Peter van 't Hof authored 10 years ago
  
  95ba716f
- Collected all gatk pipelines/artifacts into 1 maven project · 2f47af7e
  Peter van 't Hof authored 10 years ago
  
  2f47af7e
- Collected all gatk pipelines/artifacts into 1 maven project · 79435a29
  Peter van 't Hof authored 10 years ago
  
  79435a29
Jul 18, 2014
- update for Queue/GATK 3.2-2 · 62ed4c90
  Peter van 't Hof authored 10 years ago
  
  62ed4c90
Jul 15, 2014
- Update to Queue/GATK 3.2 · 0a33b3d3
  Peter van 't Hof authored 10 years ago
  
  0a33b3d3
- intial unzipped file is intermediate now · 2e45f064
  Peter van 't Hof authored 10 years ago
  
  2e45f064
- Option to skip summary · 9be7a784
  Peter van 't Hof authored 10 years ago
  
  9be7a784
Jul 03, 2014
- codestyle fix · e626880a
  Peter van 't Hof authored 10 years ago
  
  e626880a
- changed version command to def · c340b559
  Peter van 't Hof authored 10 years ago
  
  c340b559
Jun 27, 2014
- fix analysisName on Ln · 27db54a8
  Peter van 't Hof authored 10 years ago
  
  27db54a8
- Added chunking for mapping · b7690fca
  Peter van 't Hof authored 10 years ago
  
  b7690fca
Jun 26, 2014
- fixed call to sub pipeline · 6090fa33
  Peter van 't Hof authored 10 years ago
  
  6090fa33
Jun 23, 2014
- pom changes for start of 0.1.3 · 9e9e6022
  Peter van 't Hof authored 10 years ago
  
  9e9e6022
- Added bz2 support · 66dc8af2
  Peter van 't Hof authored 10 years ago
  
  66dc8af2
- Changed constructors · ea4f80e1
  Peter van 't Hof authored 10 years ago
  
  ea4f80e1
Jun 21, 2014
- Config changed · c22acb87
  Peter van 't Hof authored 10 years ago
  
  c22acb87
Jun 19, 2014
- Readme changed to README.md · cfee098a
  Peter van 't Hof authored 10 years ago
  
  cfee098a
- Readme changed to README.md · a33d9fd2
  Peter van 't Hof authored 10 years ago
  
  a33d9fd2
- Path to class for main class changed · 90e96f6c
  Peter van 't Hof authored 10 years ago
  
  90e96f6c
- Code style changes · a2c2e0fc
  Peter van 't Hof authored 10 years ago
  
  a2c2e0fc
- Packaging changed, no scala compiler anymore in jar · 27de6356
  Peter van 't Hof authored 10 years ago
  
  27de6356
Jun 17, 2014
- version changes · f0705ac8
  Peter van 't Hof authored 10 years ago
  
  removing source files from jar packaging
  f0705ac8
- No inline functions extending anymore · 69ba3389
  Peter van 't Hof authored 10 years ago
  
  69ba3389
- Added BiopetCommandlineFunction · bd8a2a63
  Peter van 't Hof authored 10 years ago
  
  All commandlinefunctions now extends from this trait
  bd8a2a63
Jun 13, 2014
- Rename directories and package identifiers for consistency with Queue · 4e14ca72
  bow authored 10 years ago
  
  4e14ca72
Jun 12, 2014
- Extends directly on Python · fcaccd90
  Peter van 't Hof authored 10 years ago
  
  fcaccd90
- Skipped compiling step at init phase of pipeline · e031256a
  Peter van 't Hof authored 10 years ago
  
  e031256a
Jun 10, 2014
- example jsons changed/added · 5b01a7d9
  Peter van 't Hof authored 10 years ago
  
  5b01a7d9
Jun 09, 2014
- deps not required · 50dc06bb
  Peter van 't Hof authored 10 years ago
  
  50dc06bb
- fixed bug on skip arguments · dc3bc04f
  Peter van 't Hof authored 10 years ago
  
  fixed output file when input file is not zipped skipping final seqstat and sha1sum when skipclip and skiptrim is true
  dc3bc04f