Commits · b7690fca763887423fde3ac85e7001a5d9e69fda · Mirrors / biopet.biopet

Jun 27, 2014
- Added chunking for mapping · b7690fca
  Peter van 't Hof authored 10 years ago
  
  b7690fca
Jun 26, 2014
- fixed call to sub pipeline · 6090fa33
  Peter van 't Hof authored 10 years ago
  
  6090fa33
- Added default flag · bbc21279
  Peter van 't Hof authored 10 years ago
  
  bbc21279
- Added config report · 7d27887a
  Peter van 't Hof authored 10 years ago
  
  7d27887a
- Added config report · cd175ab7
  Peter van 't Hof authored 10 years ago
  
  cd175ab7
- Added config report · 71a74799
  Peter van 't Hof authored 10 years ago
  
  71a74799
- Added stand_call_conf and stand_emit_conf as config option · 40c694ad
  Peter van 't Hof authored 10 years ago
  
  40c694ad
- Added intermediates in creator object · f7f087b2
  Peter van 't Hof authored 10 years ago
  
  f7f087b2
- Added a alternative add function for Intermediate jobs · c4c4c974
  Peter van 't Hof authored 10 years ago
  
  c4c4c974
- Added Intermediate files · cb72d450
  Peter van 't Hof authored 10 years ago
  
  cb72d450
Jun 23, 2014
- pom changes for start of 0.1.3 · 9e9e6022
  Peter van 't Hof authored 10 years ago
  
  9e9e6022
- memory multiples by the number of threads · a779a651
  Peter van 't Hof authored 10 years ago
  
  a779a651
- Added bz2 support · 66dc8af2
  Peter van 't Hof authored 10 years ago
  
  66dc8af2
- Also a class for JavaCommandLineTools · f54fc743
  Peter van 't Hof authored 10 years ago
  
  f54fc743
- Thread options does not work anymore from QScript · b9325173
  Peter van 't Hof authored 10 years ago
  
  b9325173
- Moved getThreads to BiopetCommandLineFunction · a4bacc87
  Peter van 't Hof authored 10 years ago
  
  a4bacc87
- Changed constructors · ea4f80e1
  Peter van 't Hof authored 10 years ago
  
  ea4f80e1
- Full funcional object now, root need to be in the constructor of class · c7abaef3
  Peter van 't Hof authored 10 years ago
  
  c7abaef3
- Move init msg out of the sub-constructor and changed to debug · 869e1851
  Peter van 't Hof authored 10 years ago
  
  869e1851
- General QScript with default configfiles, outputDir and outputFiles · d60a291a
  Peter van 't Hof authored 10 years ago
  
  d60a291a
- Separated multisample functions to an other class · 027a6ff3
  Peter van 't Hof authored 10 years ago
  
  027a6ff3
Jun 21, 2014
- Config changed · c22acb87
  Peter van 't Hof authored 10 years ago
  
  c22acb87
Jun 19, 2014
- Readme changed to README.md · cfee098a
  Peter van 't Hof authored 10 years ago
  
  cfee098a
- Readme changed to README.md · a33d9fd2
  Peter van 't Hof authored 10 years ago
  
  a33d9fd2
- Path to class for main class changed · 90e96f6c
  Peter van 't Hof authored 10 years ago
  
  90e96f6c
- Code style changes · a2c2e0fc
  Peter van 't Hof authored 10 years ago
  
  a2c2e0fc
- now uses direct class file · a34d5672
  Peter van 't Hof authored 10 years ago
  
  a34d5672
- no merging when map is still empty · 667f417f
  Peter van 't Hof authored 10 years ago
  
  667f417f
- Packaging changed, no scala compiler anymore in jar · 27de6356
  Peter van 't Hof authored 10 years ago
  
  27de6356
Jun 17, 2014
- version changes · f0705ac8
  Peter van 't Hof authored 10 years ago
  
  removing source files from jar packaging
  f0705ac8
- No inline functions extending anymore · 69ba3389
  Peter van 't Hof authored 10 years ago
  
  69ba3389
- Better subprocess · 3f393b6d
  Peter van 't Hof authored 10 years ago
  
  3f393b6d
- Added BiopetCommandlineFunction · bd8a2a63
  Peter van 't Hof authored 10 years ago
  
  All commandlinefunctions now extends from this trait
  bd8a2a63
- Fixed env value · c4bdd49e
  Peter van 't Hof authored 10 years ago
  
  c4bdd49e
- Fixed default runname · 8c4f3b7c
  Peter van 't Hof authored 10 years ago
  
  8c4f3b7c
Jun 13, 2014
- Merge branch 'refactor_core-funcs' into 'master' · 02b6241f
  Peter van 't Hof authored 10 years ago
  
  Refactor core funcs
  02b6241f
- Rename directories and package identifiers for consistency with Queue · 4e14ca72
  bow authored 10 years ago
  
  4e14ca72
Jun 12, 2014
- Extends directly on Python · fcaccd90
  Peter van 't Hof authored 10 years ago
  
  fcaccd90
- Skipped compiling step at init phase of pipeline · e031256a
  Peter van 't Hof authored 10 years ago
  
  e031256a
Jun 10, 2014
- example jsons changed/added · 5b01a7d9
  Peter van 't Hof authored 10 years ago
  
  5b01a7d9