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biopet.biopet
Commits
c4c4c974
Commit
c4c4c974
authored
Jun 26, 2014
by
Peter van 't Hof
Browse files
Added a alternative add function for Intermediate jobs
parent
cb72d450
Changes
1
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biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetQScript.scala
View file @
c4c4c974
...
...
@@ -4,6 +4,7 @@ package nl.lumc.sasc.biopet.core
import
java.io.File
import
nl.lumc.sasc.biopet.core.config._
import
org.broadinstitute.sting.commandline._
import
org.broadinstitute.sting.queue.function.QFunction
trait
BiopetQScript
extends
Configurable
{
@Argument
(
doc
=
"Config Json file"
,
shortName
=
"config"
,
required
=
false
)
...
...
@@ -22,4 +23,12 @@ trait BiopetQScript extends Configurable {
biopetScript
// TODO: Config report
}
def
add
(
functions
:
QFunction*
)
// Gets implemeted at org.broadinstitute.sting.queue.QScript
def
add
(
function
:
QFunction
,
isIntermediate
:
Boolean
=
false
)
{
function
.
isIntermediate
=
isIntermediate
add
(
function
)
}
}
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