Commits · ad4b957a68f4a81efbd650aefa11b3fed8838e5a · Mirrors / biopet.biopet

Oct 27, 2015
- Added more settings to the summary · ad4b957a
  Peter van 't Hof authored 9 years ago
  
  ad4b957a
- Style changes · f1011497
  Peter van 't Hof authored 9 years ago
  
  f1011497
- Implemented sample specific settings in the summary · 7e1495dc
  Peter van 't Hof authored 9 years ago
  
  7e1495dc
- Remove undeed trait · 59e750bf
  Peter van 't Hof authored 9 years ago
  
  59e750bf
Oct 26, 2015
- Remove file checking · c40dda46
  Peter van 't Hof authored 9 years ago
  
  c40dda46
- Fix summary key · 186db74d
  Peter van 't Hof authored 9 years ago
  
  186db74d
- Fixed bcftools merge step · 779e8aa3
  Peter van 't Hof authored 9 years ago
  
  779e8aa3
- Fixed unknown executables · 9156f68c
  Peter van 't Hof authored 9 years ago
  
  9156f68c
- Style changes · db4dcbca
  Peter van 't Hof authored 9 years ago
  
  db4dcbca
- Fix exist · 66f1b6ec
  Peter van 't Hof authored 9 years ago
  
  66f1b6ec
- Fix case class · 21d0cae7
  Peter van 't Hof authored 9 years ago
  
  21d0cae7
- Move Executable function outside of class · 311e596b
  Peter van 't Hof authored 9 years ago
  
  311e596b
Oct 25, 2015
- Set defaults for gc limits · 595e482d
  Peter van 't Hof authored 9 years ago
  
  595e482d
Oct 23, 2015
- Added GenotypeConcordance to shiva · 18e22c1b
  Peter van 't Hof authored 9 years ago
  
  18e22c1b
- Added GenotypeConcordance · 05bff3ab
  Peter van 't Hof authored 9 years ago
  
  05bff3ab
Oct 22, 2015
- proper temp files · 4dcbb9cd
  Sander Bollen authored 9 years ago
  
  4dcbb9cd
- fix for #222 · b4bb3fd3
  Sander Bollen authored 9 years ago
  
  b4bb3fd3
- refactor memorylimit · a5a9f4b1
  Sander van der Zeeuw authored 9 years ago
  
  a5a9f4b1
Oct 21, 2015
- Fix typo of trait class ToolCommandFuntion -> ToolCommandFunction #221 · 6e7eeb41
  Wai Yi Leung authored 9 years ago
  
  6e7eeb41
- Change to compressed output · 46f8b1b5
  Peter van 't Hof authored 9 years ago
  
  46f8b1b5
- Fix sample and library flag · 43a4bc76
  Peter van 't Hof authored 9 years ago
  
  43a4bc76
- changed imports · 0d010c88
  Sander van der Zeeuw authored 9 years ago
  
  0d010c88
Oct 20, 2015
- Changed error message · 0832f655
  Peter van 't Hof authored 9 years ago
  
  0832f655
- change regex · bf1d0b71
  Peter van 't Hof authored 9 years ago
  
  bf1d0b71
- added bcftools singlesample to the test of public · 025740f5
  Sander van der Zeeuw authored 9 years ago
  
  025740f5
- Moved function to utils, this might be usefull in other pipelines · 954e0245
  Peter van 't Hof authored 9 years ago
  
  954e0245
Oct 19, 2015
- added dependency for combinevariants · f17e2175
  Sander van der Zeeuw authored 9 years ago
  
  f17e2175
- Use provided exts Set instead of zipExtensions · 6af00416
  bow authored 9 years ago
  
  6af00416
- Remove R1_ext and R2_ext from Flexiprep · 90eaaf09
  bow authored 9 years ago
  
  90eaaf09
- Add error message when a Flexiprep input file does not have the expected structure · 487324b4
  bow authored 9 years ago
  
  487324b4
- Refactor filename and extension retrieval in Flexiprep · b4b6785a
  bow authored 9 years ago
  
  b4b6785a
Oct 16, 2015
- add bcf merge to shiva and create wrapper · 34024cc5
  Sander van der Zeeuw authored 9 years ago
  
  34024cc5
- Limit memory for each test thread · 11579c5d
  Peter van 't Hof authored 9 years ago
  
  11579c5d
- Style fix · c6ebdcae
  Peter van 't Hof authored 9 years ago
  
  c6ebdcae
- added tabix to bcftools output · f1599432
  Sander van der Zeeuw authored 9 years ago
  
  f1599432
Oct 15, 2015
- Gentrap test are now divided over 7 threads · 9cae1c11
  Peter van 't Hof authored 9 years ago
  
  9cae1c11
- Rename file · f8785ed4
  Peter van 't Hof authored 9 years ago
  
  f8785ed4
- Remove some test and optimize code · c0d8c129
  Peter van 't Hof authored 9 years ago
  
  c0d8c129
- Each aligner has his own class now · 08bcca4d
  Peter van 't Hof authored 9 years ago
  
  08bcca4d
- added proper piping to bcftools and mpileup. [GENTRAP VARSCAN SHOULD BE TESTED] · 76da8883
  Sander van der Zeeuw authored 9 years ago
  
  76da8883