Commits · a952d8c4768560ee4eda02d39f08c56541662335 · Mirrors / biopet.biopet

Sep 22, 2015
- Convert mapping to sortsam for pipes · a952d8c4
  Peter van 't Hof authored 9 years ago
  
  a952d8c4
- Convert pipe to SortSam again · 9a3356a5
  Peter van 't Hof authored 9 years ago
  
  9a3356a5
- Moved sam file · bb300878
  Peter van 't Hof authored 9 years ago
  
  bb300878
- Use piping after bwamem · f7ea04a7
  Peter van 't Hof authored 9 years ago
  
  f7ea04a7
Sep 18, 2015
- Fixed unit tests · 6c7f4701
  Peter van 't Hof authored 9 years ago
  
  6c7f4701
- Fixed case class · bd6eae2c
  Peter van 't Hof authored 9 years ago
  
  bd6eae2c
- Adding input files to check · 3c83721a
  Peter van 't Hof authored 9 years ago
  
  3c83721a
Sep 14, 2015
- Fix unit test · 1b160347
  Peter van 't Hof authored 9 years ago
  
  1b160347
Sep 13, 2015
- Fix pipeline without framework · f3343df9
  Peter van 't Hof authored 9 years ago
  
  f3343df9
Sep 11, 2015
- Tools split into new modules, core and utils are compileable now · eb97957f
  Peter van 't Hof authored 9 years ago
  
  eb97957f
Sep 10, 2015
- Moved config to utils · a81bce67
  Peter van 't Hof authored 9 years ago
  
  a81bce67
Sep 04, 2015
- Changing to SNAPSHOT version, this is following the maven convention · f550b637
  Peter van 't Hof authored 9 years ago
  
  f550b637
Aug 28, 2015
- No chunk_metrics when chunking is disabled · 04adff67
  Peter van 't Hof authored 9 years ago
  
  04adff67
Aug 25, 2015
- Fixed tophat unittests · 3644ce72
  Peter van 't Hof authored 9 years ago
  
  3644ce72
Aug 17, 2015
- Fix inversion · 92ae5a49
  Peter van 't Hof authored 9 years ago
  
  92ae5a49
Aug 15, 2015
- Skipping parts of report when they are skipped in the pipeline · e07267db
  Peter van 't Hof authored 9 years ago
  
  e07267db
Aug 06, 2015
- remove parallel data providers · 03d9db7b
  Peter van 't Hof authored 9 years ago
  
  03d9db7b
- enable parallel data providers · 907c8ddb
  Peter van 't Hof authored 9 years ago
  
  907c8ddb
Aug 03, 2015
- Fix for #184 · 2196bd9d
  Peter van 't Hof authored 9 years ago
  
  2196bd9d
Jul 30, 2015
- Bumb version to 0.5.0-DEV · c3b83b90
  Peter van 't Hof authored 9 years ago
  
  c3b83b90
- Bumb version to 0.4.0 · 6186881d
  Peter van 't Hof authored 9 years ago
  
  6186881d
Jul 28, 2015
- Bumb version to 0.4.0-RC2 · d5834cba
  Peter van 't Hof authored 9 years ago
  
  View commits for tag v0.4.0-RC2 v0.4.0-RC2
  
  d5834cba
Jul 27, 2015
- Bumb version 0.4.0-RC1 · 5224df5b
  Peter van 't Hof authored 9 years ago
  
  View commits for tag v0.4.0-RC1 v0.4.0-RC1
  
  5224df5b
- Adding license · bcc9debe
  Peter van 't Hof authored 9 years ago
  
  bcc9debe
Jul 16, 2015
- Fix symlinking of the final bai file · 12da6e96
  Sander van der Zeeuw authored 9 years ago
  
  12da6e96
Jul 06, 2015
- Added defaults to gsnap for sam format · 1fb2569e
  Sander van der Zeeuw authored 9 years ago
  
  1fb2569e
Jul 03, 2015
- Fix code style warnings · c7b928d3
  Peter van 't Hof authored 9 years ago
  
  c7b928d3
- Fix code style warnings · 2c323f38
  Peter van 't Hof authored 9 years ago
  
  2c323f38
Jul 02, 2015
- https is working now, revert the change but keep the new layout and abbr tag.... · 82e665b3
  Wai Yi Leung authored 9 years ago
  82e665b3
- https is working now, revert the change but keep the new layout and abbr tag. · a83bb91e
  Wai Yi Leung authored 9 years ago
  
  a83bb91e
- Fix the link to sasc.lumc.nl (don't point to the https version, redirect is... · 96c79ed5
  Wai Yi Leung authored 9 years ago
  96c79ed5
Jul 01, 2015
- Optimize imports · 9812237c
  Peter van 't Hof authored 9 years ago
  
  9812237c
- Front page texts for report · 8282c888
  Sander Bollen authored 9 years ago
  
  8282c888
Jun 30, 2015
- Remove sortable tables from file lists · dee7eea1
  Peter van 't Hof authored 9 years ago
  
  dee7eea1
Jun 29, 2015
- Changes method name · 2ce81c48
  Peter van 't Hof authored 9 years ago
  
  2ce81c48
Jun 28, 2015
- Use absolute path for tophat fix output · 657d8684
  bow authored 9 years ago
  
  657d8684
- Update BamMetrics RNA mode and its tests · 5301853f
  bow authored 9 years ago
  
  5301853f
- Style updates · a8a816b5
  bow authored 9 years ago
  
  a8a816b5
Jun 27, 2015
- Rename Seqstat -> SeqStat · 58102415
  bow authored 9 years ago
  
  58102415
- Add step for merging unmapped and mapped tophat alignment files · 2db37a64
  bow authored 9 years ago
  
  2db37a64