Commits · 9c9edf13243970e1d98214551dc134e9c5b5984b · Mirrors / biopet.biopet

Sep 10, 2015
- Adding -o option to hide output from stdout · 9c9edf13
  Peter van 't Hof authored 9 years ago
  
  9c9edf13
- Capture stderr · 5f0b7d9a
  Peter van 't Hof authored 9 years ago
  
  5f0b7d9a
- Redirecting output to a file · e683889c
  Peter van 't Hof authored 9 years ago
  
  e683889c
- Redirecting output to a file · 7c3a9d09
  Peter van 't Hof authored 9 years ago
  
  7c3a9d09
- Added -o option · a386583c
  Peter van 't Hof authored 9 years ago
  
  a386583c
Sep 09, 2015
- More compact help text · cb3dfee1
  Peter van 't Hof authored 9 years ago
  
  cb3dfee1
- Adding output file, output not to stdout anymore · d0887e43
  Peter van 't Hof authored 9 years ago
  
  d0887e43
- Output to a file, no output to stdout anymore · cf11d4ac
  Peter van 't Hof authored 9 years ago
  
  cf11d4ac
- Style changes · 07d09eb4
  Peter van 't Hof authored 9 years ago
  
  07d09eb4
- Add output arg to sampletsvtojson · 3265843e
  Peter van 't Hof authored 9 years ago
  
  3265843e
- Add output arg to biopet flagstat · 6a83d167
  Peter van 't Hof authored 9 years ago
  
  6a83d167
- Fixed arg · f2d40822
  Peter van 't Hof authored 9 years ago
  
  f2d40822
- Simplify method · 0ed7ca34
  Peter van 't Hof authored 9 years ago
  
  0ed7ca34
- Adding more AnyVal for better support for other types · 7d6eb6fb
  Peter van 't Hof authored 9 years ago
  
  7d6eb6fb
- Possible to change output of seqstat to a file instead of stdout · ed7e9588
  Peter van 't Hof authored 9 years ago
  
  ed7e9588
- Change vars to vals, possible because method 'addTagresultToTaglib' is now changed · 1c155c9b
  Peter van 't Hof authored 9 years ago
  
  1c155c9b
- Change logging to logger.info · 9b465609
  Peter van 't Hof authored 9 years ago
  
  9b465609
- Fix ode style · a32bc102
  Peter van 't Hof authored 9 years ago
  
  a32bc102
- Auto style fixes · 782140f5
  Sander Bollen authored 9 years ago
  
  782140f5
- finishing up VcfStatsTEst · e8b087a1
  Sander Bollen authored 9 years ago
  
  e8b087a1
- add testCheckGeneral · 74a7b056
  Sander Bollen authored 9 years ago
  
  74a7b056
Sep 08, 2015
- sort test · e119b397
  Sander Bollen authored 9 years ago
  
  e119b397
- validation of wiggle track options · 9a5d5343
  Sander Bollen authored 9 years ago
  
  9a5d5343
- testing main and valuefromtsv · 9a9f6f66
  Sander Bollen authored 9 years ago
  
  9a9f6f66
- testing map mergers · 6a21310f
  Sander Bollen authored 9 years ago
  
  6a21310f
- create test stubs · 1dae06f5
  Sander Bollen authored 9 years ago
  
  1dae06f5
- Validations and text messages for VcfStats optparser · d5b713e0
  Sander Bollen authored 9 years ago
  
  d5b713e0
- fix for #200 · af8d9983
  Sander Bollen authored 9 years ago
  
  af8d9983
Sep 07, 2015
- SageCreateTagCountsTest · 895a1f22
  Sander Bollen authored 9 years ago
  
  895a1f22
- fix SageCreateTagCounts · 6d2b737a
  Sander Bollen authored 9 years ago
  
  6d2b737a
- autostyle fixes · fed29c72
  Sander Bollen authored 9 years ago
  
  fed29c72
- SageCreateLibraryTest · dca51f45
  Sander Bollen authored 9 years ago
  
  dca51f45
- fixing SageCreateLibrary · ea4e9d7e
  Sander Bollen authored 9 years ago
  
  ea4e9d7e
Sep 03, 2015
- VcfWithVcfTest completion · cfcd6e0e
  Sander Bollen authored 9 years ago
  
  cfcd6e0e
- More tests for VcfWithVcfTest · c4742c8d
  Sander Bollen authored 9 years ago
  
  c4742c8d
- VcfWithVCf refactor · 0499783f
  Sander Bollen authored 9 years ago
  
  0499783f
Aug 31, 2015
- Some extras for VcfWithVcfTest · 20eb2f37
  Sander Bollen authored 9 years ago
  
  20eb2f37
- SummaryToTsvTest · 8a5bf774
  Sander Bollen authored 9 years ago
  
  8a5bf774
- Refactoring SummaryToTsv to make it more testable · d1bd5949
  Sander Bollen authored 9 years ago
  
  Removing extraneous output flag (wasn't used) Better help messages And mode validation
  d1bd5949
Aug 28, 2015
- Adding some todos to seq stat · 81b7da44
  Sander Bollen authored 9 years ago
  
  81b7da44