Commits · 6c7c75a7027b4f38c5035e0d46532972dde483e7 · Mirrors / biopet.biopet

Feb 26, 2015
- Disable parallel tests · be0ef827
  Peter van 't Hof authored 10 years ago
  
  be0ef827
Feb 24, 2015
- Fix imports · fd8d9ae0
  Peter van 't Hof authored 10 years ago
  
  fd8d9ae0
Feb 19, 2015
- Added scala docs · 6fccbe6c
  Peter van 't Hof authored 10 years ago
  
  6fccbe6c
- fixing missing cutadapt mock values · cb6f9998
  Sander Bollen authored 10 years ago
  
  cb6f9998
- Changed executables for summary · ea9fe977
  Peter van 't Hof authored 10 years ago
  
  ea9fe977
- Added Markduplicates to summary · a61296b2
  Peter van 't Hof authored 10 years ago
  
  a61296b2
Feb 18, 2015
- Rename data to settings · 73435d56
  Peter van 't Hof authored 10 years ago
  
  73435d56
Feb 17, 2015
- Fix sickle in unit tests · df207f04
  Peter van 't Hof authored 10 years ago
  
  df207f04
Feb 16, 2015
- Added summaries · d523db6c
  Peter van 't Hof authored 10 years ago
  
  d523db6c
- Added summary framework to mapping and flexiprep · 0c3deab9
  Peter van 't Hof authored 10 years ago
  
  0c3deab9
- Remove variable IDE files · 50400d8c
  bow authored 10 years ago
  
  50400d8c
- Adding Seqstat to the pipeline tests · 306e857d
  Wai Yi Leung authored 10 years ago
  
  306e857d
- Use unique and transient temp directory for each pipeline test · 280f922d
  bow authored 10 years ago
  
  280f922d
Feb 14, 2015
- Fix outputDirs · 7b8a06ed
  Peter van 't Hof authored 10 years ago
  
  7b8a06ed
- Fix dependencies · 1926c8f8
  Peter van 't Hof authored 10 years ago
  
  1926c8f8
Feb 13, 2015
- Fix output dirs · d5b3661d
  Peter van 't Hof authored 10 years ago
  
  d5b3661d
- remove timestamp · 3152e5fc
  Peter van 't Hof authored 10 years ago
  
  3152e5fc
- Added test log4j.properties · 64397750
  Peter van 't Hof authored 10 years ago
  
  64397750
Feb 12, 2015
- Added star-2pass and stampy to data provider, not having 192 unit tests · 62308c50
  Peter van 't Hof authored 10 years ago
  
  62308c50
- Added 128 unit tests to mapping pipeline · 36641e26
  Peter van 't Hof authored 10 years ago
  
  36641e26
- Fix "/" format errors · dd6abc7e
  Peter van 't Hof authored 10 years ago
  
  dd6abc7e
- Change outputDir to File · 8ca365cb
  Peter van 't Hof authored 10 years ago
  
  8ca365cb
Feb 11, 2015
- Formatting · 4a70b115
  bow authored 10 years ago
  
  4a70b115
Feb 10, 2015
- Add bam2wig in imls · 3a4a8459
  Peter van 't Hof authored 10 years ago
  
  3a4a8459
Feb 09, 2015
- Added bam2wig · 661f4ebd
  Peter van 't Hof authored 10 years ago
  
  661f4ebd
- Added optional bam2wig step · fb5ce3e0
  Peter van 't Hof authored 10 years ago
  
  fb5ce3e0
Feb 05, 2015
- Remove redundant check on outputDir character · 700ced12
  bow authored 10 years ago
  
  700ced12
Feb 03, 2015
- Skip extractIfNeeded on R2 when not paired · 481a7a96
  Peter van 't Hof authored 10 years ago
  
  481a7a96
- Change to option types · 71eb5183
  Peter van 't Hof authored 10 years ago
  
  71eb5183
- Expose sample ID and library ID as command line flags in mapping pipeline · 904a99b9
  bow authored 10 years ago
  
  904a99b9
- Use requirements check on mapping and flexiprep pipeline · a9c9dfbd
  bow authored 10 years ago
  
  a9c9dfbd
- Rename libraryId -> libId for consistency · ad0c55bc
  bow authored 10 years ago
  
  ad0c55bc
Jan 30, 2015
- Aligner BWA typo and Mapping clean paths · ccd0ed71
  Wai Yi Leung authored 10 years ago
  
  ccd0ed71
Jan 28, 2015
- Renaming values · bbd005c3
  Peter van 't Hof authored 10 years ago
  
  bbd005c3
Jan 27, 2015
- Adds finalBamFile function · c18e88d9
  Peter van 't Hof authored 10 years ago
  
  c18e88d9
- Remove Queue command args · f60b77cc
  Peter van 't Hof authored 10 years ago
  
  f60b77cc
Jan 19, 2015
- Remove unused vars · b3ae6caf
  Peter van 't Hof authored 10 years ago
  
  b3ae6caf
Jan 16, 2015
- make aln/sampe/samse jobs intermediate · 8e8b825e
  Peter van 't Hof authored 10 years ago
  
  8e8b825e
- Added bwa aln to mapping pipeline · bdc6999e
  Peter van 't Hof authored 10 years ago
  
  bdc6999e
- Move aligners to nl.lumc.sasc.biopet.exetensions · 695650c2
  Peter van 't Hof authored 10 years ago
  
  695650c2