Commits · 643418a2675cf51c59c668da67ba819f49ce3c55 · Mirrors / biopet.biopet

Sep 14, 2015
- style changes · 643418a2
  Peter van 't Hof authored 9 years ago
  
  643418a2
- Merge branch 'develop' into feature-pipeable · b8afbacb
  Peter van 't Hof authored 9 years ago
  
  Conflicts: public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/SeqStat.scala
  b8afbacb
Sep 10, 2015
- Merge branch 'tooltests' into 'develop' · b7ae99c2
  Wai Yi Leung authored 9 years ago
  
  Tooltests Fixes #188, #196 and #200 See merge request !224
  b7ae99c2
- Adding -o option to hide output from stdout · 9c9edf13
  Peter van 't Hof authored 9 years ago
  
  9c9edf13
- Capture stderr · 5f0b7d9a
  Peter van 't Hof authored 9 years ago
  
  5f0b7d9a
- Redirecting output to a file · e683889c
  Peter van 't Hof authored 9 years ago
  
  e683889c
- Redirecting output to a file · 7c3a9d09
  Peter van 't Hof authored 9 years ago
  
  7c3a9d09
- Added -o option · a386583c
  Peter van 't Hof authored 9 years ago
  
  a386583c
Sep 09, 2015
- More compact help text · cb3dfee1
  Peter van 't Hof authored 9 years ago
  
  cb3dfee1
- Adding output file, output not to stdout anymore · d0887e43
  Peter van 't Hof authored 9 years ago
  
  d0887e43
- Output to a file, no output to stdout anymore · cf11d4ac
  Peter van 't Hof authored 9 years ago
  
  cf11d4ac
- Style changes · 07d09eb4
  Peter van 't Hof authored 9 years ago
  
  07d09eb4
- Add output arg to sampletsvtojson · 3265843e
  Peter van 't Hof authored 9 years ago
  
  3265843e
- Add output arg to biopet flagstat · 6a83d167
  Peter van 't Hof authored 9 years ago
  
  6a83d167
- Fixed arg · f2d40822
  Peter van 't Hof authored 9 years ago
  
  f2d40822
- Simplify method · 0ed7ca34
  Peter van 't Hof authored 9 years ago
  
  0ed7ca34
- Adding more AnyVal for better support for other types · 7d6eb6fb
  Peter van 't Hof authored 9 years ago
  
  7d6eb6fb
- Possible to change output of seqstat to a file instead of stdout · ed7e9588
  Peter van 't Hof authored 9 years ago
  
  ed7e9588
- Change vars to vals, possible because method 'addTagresultToTaglib' is now changed · 1c155c9b
  Peter van 't Hof authored 9 years ago
  
  1c155c9b
- Change logging to logger.info · 9b465609
  Peter van 't Hof authored 9 years ago
  
  9b465609
- Fix ode style · a32bc102
  Peter van 't Hof authored 9 years ago
  
  a32bc102
- Auto style fixes · 782140f5
  Sander Bollen authored 9 years ago
  
  782140f5
- finishing up VcfStatsTEst · e8b087a1
  Sander Bollen authored 9 years ago
  
  e8b087a1
- add testCheckGeneral · 74a7b056
  Sander Bollen authored 9 years ago
  
  74a7b056
- Adding basic unit tests · 32ff5441
  Peter van 't Hof authored 9 years ago
  
  32ff5441
- Fix code warnings · 8c71c8ff
  Peter van 't Hof authored 9 years ago
  
  8c71c8ff
- Added threads to pipe · 96e36e5e
  Peter van 't Hof authored 9 years ago
  
  96e36e5e
Sep 08, 2015
- Move class to seperated file · 2dc0d533
  Peter van 't Hof authored 9 years ago
  
  2dc0d533
- Fix compile error · 43ec6aff
  Peter van 't Hof authored 9 years ago
  
  43ec6aff
- sort test · e119b397
  Sander Bollen authored 9 years ago
  
  e119b397
- validation of wiggle track options · 9a5d5343
  Sander Bollen authored 9 years ago
  
  9a5d5343
- testing main and valuefromtsv · 9a9f6f66
  Sander Bollen authored 9 years ago
  
  9a9f6f66
- testing map mergers · 6a21310f
  Sander Bollen authored 9 years ago
  
  6a21310f
- create test stubs · 1dae06f5
  Sander Bollen authored 9 years ago
  
  1dae06f5
- Validations and text messages for VcfStats optparser · d5b713e0
  Sander Bollen authored 9 years ago
  
  d5b713e0
- fix for #200 · af8d9983
  Sander Bollen authored 9 years ago
  
  af8d9983
- Piping compliant · b996ef68
  Peter van 't Hof authored 9 years ago
  
  b996ef68
- Piping compliant · 747bb560
  Peter van 't Hof authored 9 years ago
  
  747bb560
- Piping compliant · 6ea16550
  Peter van 't Hof authored 9 years ago
  
  6ea16550
- Remove sumarizable from seqtk · 38022912
  Peter van 't Hof authored 9 years ago
  
  38022912