Commits · 5434cd5c6ba0d57fd4a6af4f5ebfc2f5ac2a761a · Mirrors / biopet.biopet · GitLab

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Nov 05, 2015
- Merge branch 'fix_gentrap_report_pdf' into 'develop' · 5434cd5c
  Peter van 't Hof authored Nov 5, 2015
  5434cd5c
- Merge branch 'fix-toucan-settings' into 'develop' · 5da74ac4
  Peter van 't Hof authored Nov 5, 2015
  5da74ac4
Nov 04, 2015
- adapters table was not filled correctly · 239b74f8
  Sander van der Zeeuw authored Nov 4, 2015
  
  239b74f8
- num_reads_discarded changed into num_reads_discarded_total · 75e1b598
  Sander van der Zeeuw authored Nov 4, 2015
  
  75e1b598
- fixes in gentrap report · e2a94705
  Sander van der Zeeuw authored Nov 4, 2015
  
  e2a94705
Nov 03, 2015
- Merge branch 'fix-gears_parse' into 'develop' · 197605c1
  Wai Yi Leung authored Nov 3, 2015
  197605c1
- Merge branch 'feature-auto_retry' into 'develop' · 25690fa1
  Wai Yi Leung authored Nov 3, 2015
  25690fa1
- Adding d3 to the core · 1b6cc64b
  Peter van 't Hof authored Nov 3, 2015
  
  1b6cc64b
- Fixed gears parsing · 9002b6ce
  Peter van 't Hof authored Nov 3, 2015
  
  9002b6ce
Nov 02, 2015
- Merge branch 'fix-shiva_fails' into 'develop' · a80e2427
  Sander Bollen authored Nov 2, 2015
  a80e2427
- Style changes · d7a5a9ef
  Peter van 't Hof authored Nov 2, 2015
  
  d7a5a9ef
- Merge remote-tracking branch 'remotes/origin/develop' into fix-shiva_fails · 7696695b
  Peter van 't Hof authored Nov 2, 2015
  7696695b
- Added a default for the retry arg · 0848eb10
  Peter van 't Hof authored Nov 2, 2015
  
  0848eb10
- there's a bug in VEP: · b7b1a0f3
  Sander Bollen authored Nov 2, 2015
  b7b1a0f3
- Merge branch 'feature-gears' into 'develop' · 8c42e046
  Sander Bollen authored Nov 2, 2015
  8c42e046
- Added sunburst plot to mapping and shiva · 89bc7d9a
  Peter van 't Hof authored Nov 2, 2015
  
  89bc7d9a
- Fixed interval tag · 62a99234
  Peter van 't Hof authored Nov 2, 2015
  
  62a99234
- Merge remote-tracking branch 'remotes/origin/develop' into fix-shiva_fails · f32902a4
  Peter van 't Hof authored Nov 2, 2015
  
  f32902a4
Oct 31, 2015
- Added sample / lib to report · 9ac622a9
  Peter van 't Hof authored Oct 31, 2015
  
  9ac622a9
Oct 30, 2015
- Fixed warning · ef064a1b
  Peter van 't Hof authored Oct 30, 2015
  
  ef064a1b
- Raise memory · 128e3f39
  Peter van 't Hof authored Oct 30, 2015
  
  128e3f39
- Adding Gears to summary output of Mapping · 72a96f7e
  Wai Yi Leung authored Oct 30, 2015
  
  72a96f7e
- Optimize code · 3cd8150f
  Peter van 't Hof authored Oct 30, 2015
  
  3cd8150f
- Added input file checking · 20cd7b6d
  Peter van 't Hof authored Oct 30, 2015
  
  20cd7b6d
- fixed dependencies foe summary · e6c8bfa8
  Peter van 't Hof authored Oct 30, 2015
  
  e6c8bfa8
Oct 29, 2015
- Simplify unmapped reads extraction · b7743a6e
  Wai Yi Leung authored Oct 29, 2015
  
  b7743a6e
- Merge Request accepted by jenkins build success · a53e20d9
  Peter van 't Hof authored Oct 29, 2015
  
  a53e20d9
- blah · 369147f4
  Sander Bollen authored Oct 29, 2015
  
  369147f4
- see #231 · c6a78d0d
  Sander Bollen authored Oct 29, 2015
  
  c6a78d0d
- Style fixes · 4d479f00
  Peter van 't Hof authored Oct 29, 2015
  
  4d479f00
- Fixed intermediate files · bbaaa914
  Peter van 't Hof authored Oct 29, 2015
  
  bbaaa914
- Fix resource copy for the report · 972ad0f3
  Wai Yi Leung authored Oct 29, 2015
  
  972ad0f3
- Fix fai check · 09fe4d50
  Peter van 't Hof authored Oct 29, 2015
  
  09fe4d50
- Fixed summary file name · 2f92eb6d
  Peter van 't Hof authored Oct 29, 2015
  
  2f92eb6d
- Added reference to bamMetrics · 6ac2ce38
  Peter van 't Hof authored Oct 29, 2015
  
  6ac2ce38
- Merge remote-tracking branch 'remotes/origin/develop' into fix-shiva_fails · 25d38d41
  Peter van 't Hof authored Oct 29, 2015
  
  25d38d41
- Changed error handeling · cf4d0b82
  Peter van 't Hof authored Oct 29, 2015
  
  cf4d0b82
- Added bammetrics when start from bam file · ef5ea6ce
  Peter van 't Hof authored Oct 29, 2015
  
  ef5ea6ce
- Hide QC from report when flexiprep is not executed · 3d73d611
  Peter van 't Hof authored Oct 29, 2015
  
  3d73d611
- change pipeline test, not test on sambambaview, but on samtoolsview · 11fe02b4
  Wai Yi Leung authored Oct 29, 2015
  
  11fe02b4