Skip to content
Snippets Groups Projects
Commit a53e20d9 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Merge Request accepted by jenkins build success

parents 9c5c1703 369147f4
No related branches found
No related tags found
No related merge requests found
......@@ -39,7 +39,7 @@ class Toucan(val root: Configurable) extends QScript with BiopetQScript with Sum
}
override def defaults = Map(
"varianteffectpredictor" -> Map("everything" -> true)
"varianteffectpredictor" -> Map("everything" -> true, "failed" -> true)
)
//defaults ++= Map("varianteffectpredictor" -> Map("everything" -> true))
......@@ -80,7 +80,7 @@ class Toucan(val root: Configurable) extends QScript with BiopetQScript with Sum
vcfWithVcf.input = outputFile
vcfWithVcf.secondaryVcf = exacFile
vcfWithVcf.output = swapExt(outputDir, outputFile, ".vcf.gz", ".exac.vcf.gz")
vcfWithVcf.fields ::= ("MAF", "MAF_exac", None)
vcfWithVcf.fields ::= ("AF", "AF_exac", None)
add(vcfWithVcf)
outputFile = vcfWithVcf.output
case _ =>
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment