Commits · 3265843e58856e7a92e40f11fdb7da5d45b2b826 · Mirrors / biopet.biopet

09 Sep, 2015 12 commits
- Add output arg to sampletsvtojson · 3265843e
  Peter van 't Hof authored Sep 09, 2015
  
  3265843e
- Add output arg to biopet flagstat · 6a83d167
  Peter van 't Hof authored Sep 09, 2015
  
  6a83d167
- Fixed arg · f2d40822
  Peter van 't Hof authored Sep 09, 2015
  
  f2d40822
- Simplify method · 0ed7ca34
  Peter van 't Hof authored Sep 09, 2015
  
  0ed7ca34
- Adding more AnyVal for better support for other types · 7d6eb6fb
  Peter van 't Hof authored Sep 09, 2015
  
  7d6eb6fb
- Possible to change output of seqstat to a file instead of stdout · ed7e9588
  Peter van 't Hof authored Sep 09, 2015
  
  ed7e9588
- Change vars to vals, possible because method 'addTagresultToTaglib' is now changed · 1c155c9b
  Peter van 't Hof authored Sep 09, 2015
  
  1c155c9b
- Change logging to logger.info · 9b465609
  Peter van 't Hof authored Sep 09, 2015
  
  9b465609
- Fix ode style · a32bc102
  Peter van 't Hof authored Sep 09, 2015
  
  a32bc102
- Auto style fixes · 782140f5
  Sander Bollen authored Sep 09, 2015
  
  782140f5
- finishing up VcfStatsTEst · e8b087a1
  Sander Bollen authored Sep 09, 2015
  
  e8b087a1
- add testCheckGeneral · 74a7b056
  Sander Bollen authored Sep 09, 2015
  
  74a7b056
08 Sep, 2015 7 commits
- sort test · e119b397
  Sander Bollen authored Sep 08, 2015
  
  e119b397
- validation of wiggle track options · 9a5d5343
  Sander Bollen authored Sep 08, 2015
  
  9a5d5343
- testing main and valuefromtsv · 9a9f6f66
  Sander Bollen authored Sep 08, 2015
  
  9a9f6f66
- testing map mergers · 6a21310f
  Sander Bollen authored Sep 08, 2015
  
  6a21310f
- create test stubs · 1dae06f5
  Sander Bollen authored Sep 08, 2015
  
  1dae06f5
- Validations and text messages for VcfStats optparser · d5b713e0
  Sander Bollen authored Sep 08, 2015
  
  d5b713e0
- fix for #200 · af8d9983
  Sander Bollen authored Sep 08, 2015
  
  af8d9983
07 Sep, 2015 5 commits
- SageCreateTagCountsTest · 895a1f22
  Sander Bollen authored Sep 07, 2015
  
  895a1f22
- fix SageCreateTagCounts · 6d2b737a
  Sander Bollen authored Sep 07, 2015
  
  6d2b737a
- autostyle fixes · fed29c72
  Sander Bollen authored Sep 07, 2015
  
  fed29c72
- SageCreateLibraryTest · dca51f45
  Sander Bollen authored Sep 07, 2015
  
  dca51f45
- fixing SageCreateLibrary · ea4e9d7e
  Sander Bollen authored Sep 07, 2015
  
  ea4e9d7e
03 Sep, 2015 3 commits
- VcfWithVcfTest completion · cfcd6e0e
  Sander Bollen authored Sep 03, 2015
  
  cfcd6e0e
- More tests for VcfWithVcfTest · c4742c8d
  Sander Bollen authored Sep 03, 2015
  
  c4742c8d
- VcfWithVCf refactor · 0499783f
  Sander Bollen authored Sep 03, 2015
  
  0499783f
31 Aug, 2015 3 commits
- Some extras for VcfWithVcfTest · 20eb2f37
  Sander Bollen authored Aug 31, 2015
  
  20eb2f37
- SummaryToTsvTest · 8a5bf774
  Sander Bollen authored Aug 31, 2015
  
  8a5bf774
- Refactoring SummaryToTsv to make it more testable · d1bd5949
  Sander Bollen authored Aug 31, 2015
```
Removing extraneous output flag (wasn't used)
Better help messages
And mode validation
```
  d1bd5949
28 Aug, 2015 9 commits
- Adding some todos to seq stat · 81b7da44
  Sander Bollen authored Aug 28, 2015
  
  81b7da44
- getorelse · d3c552a9
  Sander Bollen authored Aug 28, 2015
  
  d3c552a9
- docfix for #196 · 2beabac0
  Sander Bollen authored Aug 28, 2015
  
  2beabac0
- Fix most of #196. Only documentation remaining · 6f49ff05
  Sander Bollen authored Aug 28, 2015
  
  6f49ff05
- Partial #196. Split up in functions. · f4ee1f10
  Sander Bollen authored Aug 28, 2015
  
  f4ee1f10
- Should not forget to add the resources · 01d04462
  Sander Bollen authored Aug 28, 2015
  
  01d04462
- Tests for SamplesTsvToJsonTest. Some of these will fail before #196 is resolved. · 281b9f99
  Sander Bollen authored Aug 28, 2015
  
  281b9f99
- SageFastqCountTest. Not much to do here. · 31bf53d3
  Sander Bollen authored Aug 28, 2015
  
  31bf53d3
- PrefixFastqTest · 3c33ec7e
  Sander Bollen authored Aug 28, 2015
  
  3c33ec7e
27 Aug, 2015 1 commit
- Various style fixes · 6638216b
  Sander Bollen authored Aug 27, 2015
  
  6638216b