Commits · 07c486e9a58d921f6d967f934bb1b63d10c502e4 · Mirrors / biopet.biopet

Jul 03, 2014
- Added BiopetFlagstat · 07c486e9
  Peter van 't Hof authored 10 years ago
  
  07c486e9
- Added script for bed to picard interval file · cfe60c25
  Peter van 't Hof authored 10 years ago
  
  cfe60c25
- Added samtools flagstat · 83b6e834
  Peter van 't Hof authored 10 years ago
  
  83b6e834
- Added some picard tools to biopet · fcaea52d
  Peter van 't Hof authored 10 years ago
  
  fcaea52d
Jun 27, 2014
- Removed argonaut · 4deb4b69
  Peter van 't Hof authored 10 years ago
  
  4deb4b69
- Added pipeline template · 102d3f50
  Peter van 't Hof authored 10 years ago
  
  102d3f50
- Added pipeline template · 61f20583
  Peter van 't Hof authored 10 years ago
  
  61f20583
- Added empty pipeline for bam metrics · 7cad5b3f
  Peter van 't Hof authored 10 years ago
  
  7cad5b3f
- Added dependency · e1490bad
  Peter van 't Hof authored 10 years ago
  
  e1490bad
- fix analysisName on Ln · 27db54a8
  Peter van 't Hof authored 10 years ago
  
  27db54a8
- Remove unused import · cafd9cd7
  Peter van 't Hof authored 10 years ago
  
  cafd9cd7
- Added chunking for mapping · b7690fca
  Peter van 't Hof authored 10 years ago
  
  b7690fca
Jun 26, 2014
- fixed call to sub pipeline · 6090fa33
  Peter van 't Hof authored 10 years ago
  
  6090fa33
- Added default flag · bbc21279
  Peter van 't Hof authored 10 years ago
  
  bbc21279
- Added config report · 7d27887a
  Peter van 't Hof authored 10 years ago
  
  7d27887a
- Added config report · cd175ab7
  Peter van 't Hof authored 10 years ago
  
  cd175ab7
- Added config report · 71a74799
  Peter van 't Hof authored 10 years ago
  
  71a74799
- Added stand_call_conf and stand_emit_conf as config option · 40c694ad
  Peter van 't Hof authored 10 years ago
  
  40c694ad
- Added intermediates in creator object · f7f087b2
  Peter van 't Hof authored 10 years ago
  
  f7f087b2
- Added a alternative add function for Intermediate jobs · c4c4c974
  Peter van 't Hof authored 10 years ago
  
  c4c4c974
- Added Intermediate files · cb72d450
  Peter van 't Hof authored 10 years ago
  
  cb72d450
Jun 23, 2014
- pom changes for start of 0.1.3 · 9e9e6022
  Peter van 't Hof authored 10 years ago
  
  9e9e6022
- memory multiples by the number of threads · a779a651
  Peter van 't Hof authored 10 years ago
  
  a779a651
- Added bz2 support · 66dc8af2
  Peter van 't Hof authored 10 years ago
  
  66dc8af2
- Also a class for JavaCommandLineTools · f54fc743
  Peter van 't Hof authored 10 years ago
  
  f54fc743
- Thread options does not work anymore from QScript · b9325173
  Peter van 't Hof authored 10 years ago
  
  b9325173
- Moved getThreads to BiopetCommandLineFunction · a4bacc87
  Peter van 't Hof authored 10 years ago
  
  a4bacc87
- Changed constructors · ea4f80e1
  Peter van 't Hof authored 10 years ago
  
  ea4f80e1
- Full funcional object now, root need to be in the constructor of class · c7abaef3
  Peter van 't Hof authored 10 years ago
  
  c7abaef3
- Move init msg out of the sub-constructor and changed to debug · 869e1851
  Peter van 't Hof authored 10 years ago
  
  869e1851
- General QScript with default configfiles, outputDir and outputFiles · d60a291a
  Peter van 't Hof authored 10 years ago
  
  d60a291a
- Separated multisample functions to an other class · 027a6ff3
  Peter van 't Hof authored 10 years ago
  
  027a6ff3
Jun 21, 2014
- Config changed · c22acb87
  Peter van 't Hof authored 10 years ago
  
  c22acb87
Jun 19, 2014
- Readme changed to README.md · cfee098a
  Peter van 't Hof authored 10 years ago
  
  cfee098a
- Readme changed to README.md · a33d9fd2
  Peter van 't Hof authored 10 years ago
  
  a33d9fd2
- Path to class for main class changed · 90e96f6c
  Peter van 't Hof authored 10 years ago
  
  90e96f6c
- Code style changes · a2c2e0fc
  Peter van 't Hof authored 10 years ago
  
  a2c2e0fc
- now uses direct class file · a34d5672
  Peter van 't Hof authored 10 years ago
  
  a34d5672
- no merging when map is still empty · 667f417f
  Peter van 't Hof authored 10 years ago
  
  667f417f
- Packaging changed, no scala compiler anymore in jar · 27de6356
  Peter van 't Hof authored 10 years ago
  
  27de6356