Skip to content
Snippets Groups Projects
Commit ea2bdb56 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Remove unused lines

parent 3b55324c
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala
+ 0
− 3
View file @ ea2bdb56
...@@ -18,7 +18,6 @@ package nl.lumc.sasc.biopet.pipelines.gears ...@@ -18,7 +18,6 @@ package nl.lumc.sasc.biopet.pipelines.gears
import nl.lumc.sasc.biopet.core.summary.SummaryQScript import nl.lumc.sasc.biopet.core.summary.SummaryQScript
import nl.lumc.sasc.biopet.core.BiopetQScript.InputFile import nl.lumc.sasc.biopet.core.BiopetQScript.InputFile
import nl.lumc.sasc.biopet.core.{ PipelineCommand, SampleLibraryTag } import nl.lumc.sasc.biopet.core.{ PipelineCommand, SampleLibraryTag }
import nl.lumc.sasc.biopet.extensions.Flash
import nl.lumc.sasc.biopet.pipelines.flexiprep.Flexiprep import nl.lumc.sasc.biopet.pipelines.flexiprep.Flexiprep
import nl.lumc.sasc.biopet.utils.config.Configurable import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.queue.QScript import org.broadinstitute.gatk.queue.QScript
...@@ -134,8 +133,6 @@ class GearsSingle(val root: Configurable) extends QScript with SummaryQScript wi ...@@ -134,8 +133,6 @@ class GearsSingle(val root: Configurable) extends QScript with SummaryQScript wi
qiimeClosed.outputDir = new File(outputDir, "qiime_closed") qiimeClosed.outputDir = new File(outputDir, "qiime_closed")
qiimeClosed.fastqInput = combinedFastq qiimeClosed.fastqInput = combinedFastq
add(qiimeClosed) add(qiimeClosed)
//TODO: Plots
} }
seqCount.foreach { seqCount => seqCount.foreach { seqCount =>
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment