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biopet.biopet
Commits
ea2bdb56
Commit
ea2bdb56
authored
Dec 29, 2015
by
Peter van 't Hof
Browse files
Remove unused lines
parent
3b55324c
Changes
1
Hide whitespace changes
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public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala
View file @
ea2bdb56
...
...
@@ -18,7 +18,6 @@ package nl.lumc.sasc.biopet.pipelines.gears
import
nl.lumc.sasc.biopet.core.summary.SummaryQScript
import
nl.lumc.sasc.biopet.core.BiopetQScript.InputFile
import
nl.lumc.sasc.biopet.core.
{
PipelineCommand
,
SampleLibraryTag
}
import
nl.lumc.sasc.biopet.extensions.Flash
import
nl.lumc.sasc.biopet.pipelines.flexiprep.Flexiprep
import
nl.lumc.sasc.biopet.utils.config.Configurable
import
org.broadinstitute.gatk.queue.QScript
...
...
@@ -134,8 +133,6 @@ class GearsSingle(val root: Configurable) extends QScript with SummaryQScript wi
qiimeClosed
.
outputDir
=
new
File
(
outputDir
,
"qiime_closed"
)
qiimeClosed
.
fastqInput
=
combinedFastq
add
(
qiimeClosed
)
//TODO: Plots
}
seqCount
.
foreach
{
seqCount
=>
...
...
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