diff --git a/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala b/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala index def9eedd3eeed323da1c1d1be5fa3856cac8e457..2ee43742ec7d9ce7e341e26091f1518aa525c86e 100644 --- a/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala +++ b/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/GearsSingle.scala @@ -18,7 +18,6 @@ package nl.lumc.sasc.biopet.pipelines.gears import nl.lumc.sasc.biopet.core.summary.SummaryQScript import nl.lumc.sasc.biopet.core.BiopetQScript.InputFile import nl.lumc.sasc.biopet.core.{ PipelineCommand, SampleLibraryTag } -import nl.lumc.sasc.biopet.extensions.Flash import nl.lumc.sasc.biopet.pipelines.flexiprep.Flexiprep import nl.lumc.sasc.biopet.utils.config.Configurable import org.broadinstitute.gatk.queue.QScript @@ -134,8 +133,6 @@ class GearsSingle(val root: Configurable) extends QScript with SummaryQScript wi qiimeClosed.outputDir = new File(outputDir, "qiime_closed") qiimeClosed.fastqInput = combinedFastq add(qiimeClosed) - - //TODO: Plots } seqCount.foreach { seqCount =>