Changed menu

docs/developer/getting-started.md

@@ -2,9 +2,8 @@
 
 ### Requirements
 - Maven 3.3
-- Installed Gatk to maven local repository
-- Installed Biopet to maven local repository
--
+- Installed Gatk to maven local repository (see below)
+- Installed Biopet to maven local repository (see below)
 
 To start to develop a biopet pipeline you should have installed Gatk and Biopet in your local maven repository. Do to this execute the follow command.
 ```bash
@@ -24,3 +23,12 @@ mvn -DskipTests=true clean install
 
 ```
 
+### Basic components
+
+#### Qscript (pipeline)
+A basic pipeline would look like this.
+
+#### Extensions (wrappers)
+
+
+#### Tools (scala programs)
\ No newline at end of file

mkdocs.yml

@@ -38,8 +38,10 @@ pages:
     - 0.3.1: 'release_notes_0.3.1.md'
     - 0.3.0: 'release_notes_0.3.0.md'
 - Developer:
-    - 'developer/getting-started.md'
-    - 'developer/code-style.md'
+    - Getting Started: 'developer/getting-started.md'
+    - Code Style: 'developer/code-style.md'
+    - Scala docs:
+      - 0.4.0: 'developer/code-style.md'
 #- ['developing/Setup.md', 'Developing', 'Setting up your local development environment']
 #theme: readthedocs
 repo_url: https://github.com/biopet/biopet