Commit 883abceb authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Adding getting started

parent 5c780aa9
# Developer - Getting started
### Requirements
- Maven 3.3
- Installed Gatk to maven local repository
- Installed Biopet to maven local repository
To start to develop a biopet pipeline you should have installed Gatk and Biopet in your local maven repository. Do to this execute the follow command.
# Replace 'mvn' for to location of you maven executable or make put it in your PATH
git clone
cd gatk-protected
git checkout 3.4
# This version is bound to a version of Biopet, Biopet 0.5.0 using Gatk 3.4
mvn clean install
cd ..
git clone
cd biopet
git checkout 0.5.0
mvn -DskipTests=true clean install
......@@ -38,6 +38,7 @@ pages:
- 0.3.1: ''
- 0.3.0: ''
- Developer:
- 'developer/'
- 'developer/'
#- ['developing/', 'Developing', 'Setting up your local development environment']
#theme: readthedocs
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment