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biopet.biopet
Commits
cd89147b
Commit
cd89147b
authored
Sep 24, 2015
by
Peter van 't Hof
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docs/developer/getting-started.md
docs/developer/getting-started.md
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mkdocs.yml
mkdocs.yml
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docs/developer/getting-started.md
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cd89147b
...
...
@@ -2,9 +2,8 @@
### Requirements
-
Maven 3.3
-
Installed Gatk to maven local repository
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Installed Biopet to maven local repository
-
-
Installed Gatk to maven local repository (see below)
-
Installed Biopet to maven local repository (see below)
To start to develop a biopet pipeline you should have installed Gatk and Biopet in your local maven repository. Do to this execute the follow command.
```
bash
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@@ -24,3 +23,12 @@ mvn -DskipTests=true clean install
```
### Basic components
#### Qscript (pipeline)
A basic pipeline would look like this.
#### Extensions (wrappers)
#### Tools (scala programs)
\ No newline at end of file
mkdocs.yml
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cd89147b
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@@ -38,8 +38,10 @@ pages:
-
0.3.1
:
'
release_notes_0.3.1.md'
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0.3.0
:
'
release_notes_0.3.0.md'
-
Developer
:
-
'
developer/getting-started.md'
-
'
developer/code-style.md'
-
Getting Started
:
'
developer/getting-started.md'
-
Code Style
:
'
developer/code-style.md'
-
Scala docs
:
-
0.4.0
:
'
developer/code-style.md'
#- ['developing/Setup.md', 'Developing', 'Setting up your local development environment']
#theme: readthedocs
repo_url
:
https://github.com/biopet/biopet
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