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Created with Raphaël 2.2.029Feb262524232221181716151211109875432129Jan28272625232221201918171514121110865430Dec29282625242322211817161514131110764330Nov292726252423201918Merge remote-tracking branch 'remotes/origin/fix-278' into feature-skip_abortFix scriptMerge branch 'feature-tagging' into 'develop' TypoChange paths for the FreeC output.fix protected flagLet kopisu run for more than one sampleTypoFixed intermediateMerge branch 'feature-seqstat-reportfragmentlengths' into 'develop' pindel2vcf is crashing on unknown arguments. remove the dummy argument (used as requirement to link to pindel) Not needed anymore.progress counter in seqstat`len_histogram` is a List now, starting from 0 and ends at the max length of found sequencesAdd mock test to FreeCAdded tags documentationAdded tags to SampleTsvToJsonAdded tags to summaryadd all ze optionsMerge remote-tracking branch 'remotes/origin/fix-278' into feature-skip_abortForgot to delete tmp file on exitMake test-coverage for BamUtils 100%Add options when starting FreeC from KopisuAdd FreeC wrapper (updated for FreeC 8.7)Merge branch 'develop' into feature-cnvpipelineRemove redundant codeFix readQualHistoMap, reporting wrong number (took counts instead of idx)Fix for issue #258Added option to skip abort stepMerge branch 'feature-report_core_testing' into 'develop' Merge branch 'fix-285' into 'develop' style changesAdded multisampleReport testMerge branch 'feature-gvcftobedtest' into 'develop' Added test to generatePagesAdded test on count methodAdded section render testAdded test on render methodFixed target variant plotChange error to loggerFix intermediate