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Commit c10bb10f authored by Peter van 't Hof's avatar Peter van 't Hof
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/Freebayes.scala
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......@@ -14,7 +14,6 @@ class Freebayes(val root: Configurable) extends Variantcaller {
val fb = new nl.lumc.sasc.biopet.extensions.Freebayes(this)
fb.bamfiles = inputBams.values.toList
fb.outputVcf = new File(outputDir, namePrefix + ".freebayes.vcf")
//fb.isIntermediate = true
add(fb | new Bgzip(this) > outputFile)
add(Tabix.apply(this, outputFile))
......
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