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c10bb10f · Peter van 't Hof · 19236e6f · c10bb10f
Commit c10bb10f authored Mar 14, 2016 by Peter van 't Hof
--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/Freebayes.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/Freebayes.scala
@@ -14,7 +14,6 @@ class Freebayes(val root: Configurable) extends Variantcaller {
    val fb = new nl.lumc.sasc.biopet.extensions.Freebayes(this)
    fb.bamfiles = inputBams.values.toList
    fb.outputVcf = new File(outputDir, namePrefix + ".freebayes.vcf")
-    //fb.isIntermediate = true
    add(fb | new Bgzip(this) > outputFile)

    add(Tabix.apply(this, outputFile))