diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/Freebayes.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/Freebayes.scala
index e134f0c260bd13afa2236147df3fa3bb4285f705..d276abc7c940b3c70e589b3888b544dc4d19a490 100644
--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/Freebayes.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/Freebayes.scala
@@ -14,7 +14,6 @@ class Freebayes(val root: Configurable) extends Variantcaller {
     val fb = new nl.lumc.sasc.biopet.extensions.Freebayes(this)
     fb.bamfiles = inputBams.values.toList
     fb.outputVcf = new File(outputDir, namePrefix + ".freebayes.vcf")
-    //fb.isIntermediate = true
     add(fb | new Bgzip(this) > outputFile)
 
     add(Tabix.apply(this, outputFile))