From c10bb10f0678e1460f09d2304ed2c4179489e2f7 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 14 Mar 2016 07:56:32 +0100
Subject: [PATCH] Remove comment
---
.../sasc/biopet/pipelines/shiva/variantcallers/Freebayes.scala | 1 -
1 file changed, 1 deletion(-)
diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/Freebayes.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/Freebayes.scala
index e134f0c26..d276abc7c 100644
--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/Freebayes.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/Freebayes.scala
@@ -14,7 +14,6 @@ class Freebayes(val root: Configurable) extends Variantcaller {
val fb = new nl.lumc.sasc.biopet.extensions.Freebayes(this)
fb.bamfiles = inputBams.values.toList
fb.outputVcf = new File(outputDir, namePrefix + ".freebayes.vcf")
- //fb.isIntermediate = true
add(fb | new Bgzip(this) > outputFile)
add(Tabix.apply(this, outputFile))
--
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