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Commit a2c4d7bc authored by Peter van 't Hof's avatar Peter van 't Hof
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Style fix

parent 565f3979
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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/bowtie/Bowtie2.scala
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View file @ a2c4d7bc
...@@ -139,6 +139,7 @@ class Bowtie2(val root: Configurable) extends BiopetCommandLineFunction with Ref ...@@ -139,6 +139,7 @@ class Bowtie2(val root: Configurable) extends BiopetCommandLineFunction with Ref
Logging.addError(s"No index files found for bowtie2 in: $indexDir with basename: $basename") Logging.addError(s"No index files found for bowtie2 in: $indexDir with basename: $basename")
} }
} }
/** return commandline to execute */ /** return commandline to execute */
def cmdLine = required(executable) + def cmdLine = required(executable) +
conditional(q, "-q") + conditional(q, "-q") +
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