From a2c4d7bc31552444534a68eeeee97294197a561e Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Fri, 8 Jan 2016 13:22:43 +0100
Subject: [PATCH] Style fix
---
.../scala/nl/lumc/sasc/biopet/extensions/bowtie/Bowtie2.scala | 1 +
1 file changed, 1 insertion(+)
diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/bowtie/Bowtie2.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/bowtie/Bowtie2.scala
index 26a317561..793fd7d15 100644
--- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/bowtie/Bowtie2.scala
+++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/bowtie/Bowtie2.scala
@@ -139,6 +139,7 @@ class Bowtie2(val root: Configurable) extends BiopetCommandLineFunction with Ref
Logging.addError(s"No index files found for bowtie2 in: $indexDir with basename: $basename")
}
}
+
/** return commandline to execute */
def cmdLine = required(executable) +
conditional(q, "-q") +
--
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