diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala index 552ab987dd4c0cc13149a019c02b991001bd4616..386b37d6e550a3d82a247d280adf72979e7732a3 100644 --- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala +++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala @@ -102,10 +102,10 @@ object BastyGenerateFasta extends ToolCommand { } text ("Output name in fasta file header") opt[Int]("minAD") unbounded () action { (x, c) => c.copy(minAD = x) - } text ("min AD value in vcf file for sample") + } text ("min AD value in vcf file for sample. Defaults to: 8") opt[Int]("minDepth") unbounded () action { (x, c) => c.copy(minDepth = x) - } text ("min detp in bam file") + } text ("min depth in bam file. Defaults to: 8") opt[File]("reference") unbounded () action { (x, c) => c.copy(reference = x) } text ("Indexed reference fasta file") validate { x =>