From 9581d3289f27b7f54e2b4280425ab4702dac360a Mon Sep 17 00:00:00 2001
From: sajvanderzeeuw <sajvanderzeeuw@sasc-sander.lumcnet.prod.intern>
Date: Tue, 2 Dec 2014 14:59:41 +0100
Subject: [PATCH] Changes in help screen tool BastyGenerateFasta
---
.../scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
index 552ab987d..386b37d6e 100644
--- a/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
+++ b/public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
@@ -102,10 +102,10 @@ object BastyGenerateFasta extends ToolCommand {
} text ("Output name in fasta file header")
opt[Int]("minAD") unbounded () action { (x, c) =>
c.copy(minAD = x)
- } text ("min AD value in vcf file for sample")
+ } text ("min AD value in vcf file for sample. Defaults to: 8")
opt[Int]("minDepth") unbounded () action { (x, c) =>
c.copy(minDepth = x)
- } text ("min detp in bam file")
+ } text ("min depth in bam file. Defaults to: 8")
opt[File]("reference") unbounded () action { (x, c) =>
c.copy(reference = x)
} text ("Indexed reference fasta file") validate { x =>
--
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