Merge branch 'feature-fixbedtools_cov_stats' into 'develop'

Feature fixbedtools cov stats

Please merge!@!@!
See also #68

See merge request !47

biopet-framework/src/main/scripts/nl/lumc/sasc/biopet/scripts/bedtools_cov_stats.py

@@ -208,9 +208,9 @@ class Coverage(object):
         for x in itertools.chain(bp['boxes'], bp['medians'], bp['whiskers'],
                 bp['caps']):
             x.set(color=BLUE, linewidth=1.6)
-        bp['fliers'][0].set(color=RED, alpha=0.5)
-        bp['fliers'][1].set(color=GREEN, alpha=0.5)
-
+        for flier in bp['fliers']:
+            plt.setp(flier, color='GREEN', alpha=0.5)
+        
         upper_limit = np.percentile(self.cov_counts, percentile_show)
         if x_data:
             space = (upper_limit - min(x_data)) / 40
@@ -312,4 +312,4 @@ if __name__ == '__main__':
         files = {}
 
     json.dump({'stats': stats, 'files': files}, sys.stdout, sort_keys=True, indent=4,
-            separators=(',', ': '))
+            separators=(',', ': '))
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