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Commit 8dfc4976 authored by Wai Yi Leung's avatar Wai Yi Leung
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Fix samplename column

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public/biopet-extensions/src/main/resources/nl/lumc/sasc/biopet/extensions/breakdancer/breakdancer2vcf.py
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View file @ 8dfc4976
......@@ -94,11 +94,11 @@ _tsv_fields = ('Chr1', 'Pos1', 'Orientation1',
_vcf_fields = ('CHROM', 'POS', 'ID', 'REF', 'ALT', 'QUAL', 'FILTER', 'INFO', 'FORMAT', 'default')
_vcf_fields = ('CHROM', 'POS', 'ID', 'REF', 'ALT', 'QUAL', 'FILTER', 'INFO', 'FORMAT')
TS_NOW = datetime.datetime.now()
VCF_HEADER = """##fileformat=VCFv4.1
VCF_HEADER = """##fileformat=VCFv4.2
##fileDate={filedate}
##source=breakdancer-max
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
......
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