diff --git a/public/biopet-extensions/src/main/resources/nl/lumc/sasc/biopet/extensions/breakdancer/breakdancer2vcf.py b/public/biopet-extensions/src/main/resources/nl/lumc/sasc/biopet/extensions/breakdancer/breakdancer2vcf.py index 0430667ca130e0a70df6452bccc6efb18dbe207c..dac0175e9024f4e74909c0f8fa7bb24a3a291030 100644 --- a/public/biopet-extensions/src/main/resources/nl/lumc/sasc/biopet/extensions/breakdancer/breakdancer2vcf.py +++ b/public/biopet-extensions/src/main/resources/nl/lumc/sasc/biopet/extensions/breakdancer/breakdancer2vcf.py @@ -94,11 +94,11 @@ _tsv_fields = ('Chr1', 'Pos1', 'Orientation1', -_vcf_fields = ('CHROM', 'POS', 'ID', 'REF', 'ALT', 'QUAL', 'FILTER', 'INFO', 'FORMAT', 'default') +_vcf_fields = ('CHROM', 'POS', 'ID', 'REF', 'ALT', 'QUAL', 'FILTER', 'INFO', 'FORMAT') TS_NOW = datetime.datetime.now() -VCF_HEADER = """##fileformat=VCFv4.1 +VCF_HEADER = """##fileformat=VCFv4.2 ##fileDate={filedate} ##source=breakdancer-max ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">